PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G176900.2.p
Common NameGLYMA_04G176900, LOC100306638
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 175aa    MW: 18929.3 Da    PI: 8.2335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G176900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-1155102455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Glyma.04G176900.2.p  55 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 102
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1849120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-1149106No hitNo description
Gene3DG3DSA:4.10.280.101.0E-1851121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.82851101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-855102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1057107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKVGGSSFEN DGFKAEAEAS SVGGNKSSEQ SNKPCEAPKP DYIHVRARRG QATDSHSLAE  60
RARREKISER MKILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNSRMN  120
TNPTIDGFPS KDVGTQPFDI AGMVFGSQAA RGYAQGSSHP GWLHMQIGGG FETT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.226010.0hypocotyl| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G176900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0908470.0BT090847.1 Soybean clone JCVI-FLGm-5B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237962.21e-128helix loop helix domain-containing protein
RefseqXP_028229159.11e-128transcription factor bHLH79-like
SwissprotQ69WS36e-73BH094_ORYSJ; Transcription factor BHLH094
SwissprotQ84T087e-73BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A445L1L41e-127A0A445L1L4_GLYSO; Transcription factor BHLH094
TrEMBLI1JX081e-127I1JX08_SOYBN; Uncharacterized protein
TrEMBLI1JX091e-127I1JX09_SOYBN; Uncharacterized protein
STRINGGLYMA04G34660.11e-127(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-74BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]