PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G183700.1.p

Common Name

GLYMA_04G183700, LOC778107

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 345aa MW: 38075.4 Da PI: 7.4158

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G183700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.7	3.5e-40	53	113	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s Glyma.04G183700.1.p 53 HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 113 6899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-29	47	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	54	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.189	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGLSSLHVCM DSSDHWLQGT IHEESGMDSS SSPSGDMLTC SRPMIERRLR PPHDQALKCP 60 RCDSTHTKFC YYNNYSLSQP RYFCKTCRRY WTKGGTLRNI PVGGGCRKNK KVSAKKSNDH 120 QLVNNNNINQ TRPPHHHHPK DLQLSSFPDV QFSHLSNLLG TNANPSFMEG KYGIGMIENP 180 RPIDFMMESK LEGIIGSGSS SRNFDFFGNN DMSMGMASVG LGDMNGATTH QNGLPPNLYH 240 HGLSAFGGMS MSLDHGNNNN SDNNGANRYL MDSCQRLMLP YDVSNEDHNA QIDVKPNPKQ 300 LLSLEWQDQG CSDAGKDSFG YLNGPGSWTG MMNGYGSSTT HPLV*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGLSSLHVCM DSSDHWLQGT IHEESGMDSS SSPSGDMLTC SRPMIERRLR PPHDQALKCP  60
RCDSTHTKFC YYNNYSLSQP RYFCKTCRRY WTKGGTLRNI PVGGGCRKNK KVSAKKSNDH  120
QLVNNNNINQ TRPPHHHHPK DLQLSSFPDV QFSHLSNLLG TNANPSFMEG KYGIGMIENP  180
RPIDFMMESK LEGIIGSGSS SRNFDFFGNN DMSMGMASVG LGDMNGATTH QNGLPPNLYH  240
HGLSAFGGMS MSLDHGNNNN SDNNGANRYL MDSCQRLMLP YDVSNEDHNA QIDVKPNPKQ  300
LLSLEWQDQG CSDAGKDSFG YLNGPGSWTG MMNGYGSSTT HPLV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.22460	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G183700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857264	0.0	DQ857264.1 Glycine max Dof14 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003523081.1	0.0	dof zinc finger protein DOF5.6
TrEMBL	I1JX78	0.0	I1JX78_SOYBN; Uncharacterized protein
STRING	GLYMA04G35650.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5092	34	56
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	8e-53	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G183700.1.p
Entrez Gene	778107