PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G186100.2.p
Common NameGLYMA_04G186100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 106aa    MW: 12305.3 Da    PI: 9.5676
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G186100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.96.5e-082186467
                 FAR1  4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtg..Ckaklk 67
                           Y++ v Fs++k +  ++   ge+++rtf Cs+ g+++ +  + + ++r+ r+  r++  C+++  
  Glyma.04G186100.2.p 21 TWYSRIVNFSIQKIHVLRN-SLGETIQRTFLCSRAGRKNYRGASsSGRKRKARNGIRCErcCRCMCD 86
                         569999********99998.7888****************999853344444444444222666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-52185IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MHDVIDKLDY VDLETAYMFC TWYSRIVNFS IQKIHVLRNS LGETIQRTFL CSRAGRKNYR  60
GASSSGRKRK ARNGIRCERC CRCMCDLAYF FPSYVHVLSI QNHIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G186100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352311e-178AC235231.1 Glycine max strain Williams 82 clone GM_WBb0026L18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7KKZ27e-73K7KKZ2_SOYBN; Uncharacterized protein
STRINGGLYMA04G35955.21e-73(Glycine max)