PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G192100.1.p
Common NameGLYMA_04G192100, LOC100776363
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 571aa    MW: 61324.1 Da    PI: 4.3912
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G192100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53e-10237259426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          e C f+++tGtCk+G +CkF+H+
  Glyma.04G192100.1.p 237 EDCAFYLKTGTCKFGFNCKFNHP 259
                          89********************9 PP
2zf-CCCH27.45.6e-09285305525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          +C++++r+G Ck+G  CkF+H
  Glyma.04G192100.1.p 285 ECKYYLRSGGCKFGKACKFNH 305
                          6******************** PP
3zf-CCCH36.67.5e-12329352326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C +++rtG Ck+G++C+F+H+
  Glyma.04G192100.1.p 329 EKECLYYMRTGSCKFGANCRFNHP 352
                          679********************9 PP
4zf-CCCH29.11.7e-09463489127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++f++tG Ck+ ++CkF+H++
  Glyma.04G192100.1.p 463 PGEPECSYFLKTGDCKFKSNCKFHHPK 489
                          5799*********************96 PP
5zf-CCCH32.91.1e-10511534326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +  C +++r+G+Ck+G+ CkF H+
  Glyma.04G192100.1.p 511 QNVCTYYRRYGICKFGPACKFDHP 534
                          568********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.36E-6232261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305233261IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4233260IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-8237259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601280308IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012280307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5284308IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6285305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4286307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699326354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6327353IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5328353IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9329352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4332351IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4462489IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061462490IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-7464489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5467491IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4508535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906508536IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5510536IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8511534IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4513533IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MEPLESESVS SSAKDPLLGE PSSSVHPLDH DPQPSDLNHV TPVDDALGEE LQGKLDLKDE  60
GESDNKGSNL EDGGEKLSED KGSNLKDESG KFSDEGAAPE GGKGEGCDGD LGGVANDDDG  120
VIGDDLVSVA DDGGVVRDDL VGGVVRDDLV VVVDDGGVVR DDLVVVDDDD DGVRDDVVVV  180
VDDDDGWNGG GDEGCDCIEN VNVNESESDK VGGDVEGVKG ERSSGRAQQY PLRPEAEDCA  240
FYLKTGTCKF GFNCKFNHPL RRKNQAKKEN AGEREEQAER SGQMECKYYL RSGGCKFGKA  300
CKFNHTRGKS SSASATELNF LGLPIRVGEK ECLYYMRTGS CKFGANCRFN HPDPTTVGGG  360
DSPSGYGNGS SISLQGVSQS SISSWSSTRP LNESAPFVPV ILSPNPGVSP QSSEWNGYQA  420
PVYLSERSLH PPSTYVMNNP AMESNVYMHH QKQMLVEEFP ERPGEPECSY FLKTGDCKFK  480
SNCKFHHPKN RIARLPLCNL SDKGLPLRPD QNVCTYYRRY GICKFGPACK FDHPAPSTMA  540
GHDQQSTYIN SAGVDVAENG GAEDGNQQSV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.212690.0cotyledon| flower| meristem| pod| root| seed coat| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G192100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353400.0AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522417.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ9STM41e-139C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLI1JXF60.0I1JXF6_SOYBN; Uncharacterized protein
STRINGGLYMA04G36670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Representative plantOGRP9141714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-126C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]