PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G192400.3.p
Common NameGLYMA_04G192400, LOC102661564
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 609aa    MW: 68430.2 Da    PI: 6.2665
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G192400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3406.9e-1332121198
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk  t+  +l+   l++p  f ++  +++   +k++ l+d+s r+W+vk+  ++  g++ + +GW+ F   +g+k+g  +vF ++++  
  Glyma.04G192400.3.p  32 FFKLITKREHLT--TLYIPPAFSSTVsDLV---NKKIALNDSSERQWNVKV--SGFNGSFAFMEGWSTFSLNHGVKVGYLLVFNYVKDLH 114
                          666665555554..49******98886555...468***************..88889999999********************998666 PP

                          E..EEEEE- CS
                   B3  90 felvvkvfr 98 
                          f   vk+++
  Glyma.04G192400.3.p 115 F--DVKIYD 121
                          5..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-1826125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1827125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.91430123IPR003340B3 DNA binding domain
CDDcd100171.99E-1331121No hitNo description
SMARTSM010197.0E-1232123IPR003340B3 DNA binding domain
PfamPF023629.5E-1132120IPR003340B3 DNA binding domain
CDDcd100171.97E-6512587No hitNo description
SuperFamilySSF1019363.34E-9526591IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-8535591IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.896544608IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MCGERQRVSA CAACTNNCLL FHKTKQTSPT SFFKLITKRE HLTTLYIPPA FSSTVSDLVN  60
KKIALNDSSE RQWNVKVSGF NGSFAFMEGW STFSLNHGVK VGYLLVFNYV KDLHFDVKIY  120
DPSACEKLNF PKTRNQKKRS RGRSGSPVRD CMLVGQESNA LVVTQHYVPK MKSQRSEVDL  180
VVRKNGEESG QLMCISELHE DPCYSTSLEF DQSHGVNGTM KIVNGDLKVS NVDYGSHIFE  240
NDAIVCSKDT MFEGIFSMAA ALDISEFEMS GRSTSLGEAD KSTHDKTSTL NIEENKESKA  300
IMYSGEAQEC QFSNVLESDQ AAISKKEPAL HIDGSCNTKN KFNEISNHLD TYIHNGEMKK  360
LPVDKTPKLY SSVDKLNVTG LPKETKGKLD HYSDPFNQDN ESHFKTAPPL MSNGEAQECQ  420
FSEGLESDQA AISKKEPALH ICGFSDTKQN FDGISNDLDG EMKKLPMDMT PKLCGSMDKL  480
NITELPKEIK DSDISNQDDE SHFKTAPPLS CVVTNDNDNV SLKLPEYLPL TRRVKPFTHK  540
KMVVLLRDSQ MRLWPVFYHE QPRLLTHGWL DFSRANNIQP EDECIFEVEP DPESRYQRIL  600
AVSIVHKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G192400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353401e-163AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578685.10.0B3 domain-containing protein Os01g0905400 isoform X2
RefseqXP_028229380.10.0B3 domain-containing protein Os01g0905400-like isoform X2
TrEMBLA0A445L2K90.0A0A445L2K9_GLYSO; B3 domain-containing protein isoform A
TrEMBLK7KL380.0K7KL38_SOYBN; Uncharacterized protein
STRINGGLYMA04G36750.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-11B3 family protein