PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G199000.1.p

Common Name

GLYMA_04G199000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 170aa MW: 18797.8 Da PI: 5.2415

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G199000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	43	1.4e-13	28	73	85	128
NAM 85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk + s+ + gl+ktLvfy+g++p+g++tdWvmheyrl Glyma.04G199000.1.p 28 ATGSDKIISSSvsNIGFAGLRKTLVFYEGKSPNGSRTDWVMHEYRL 73 5888888888643444499*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.245	1	90	IPR003441	NAC domain
SuperFamily	SSF101941	6.67E-22	10	90	IPR003441	NAC domain
Pfam	PF02365	5.6E-6	43	73	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MERINFIENG VSGLPPGFRF QPTDEELATG SDKIISSSVS NIGFAGLRKT LVFYEGKSPN 60 GSRTDWVMHE YRLNYANEIG EWILCRIFMK KRNIESDNNT TAPRKNNNAV MNNVEVAQPR 120 FFDFLSVHNS APPAPIQYSS TSSSCSSSNN VVEASSPNHE ETSGYADFC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-16	28	91	100	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-16	28	91	100	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-16	28	91	100	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-16	28	91	100	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-16	28	91	103	169	NAC domain-containing protein 19
3swm_B	4e-16	28	91	103	169	NAC domain-containing protein 19
3swm_C	4e-16	28	91	103	169	NAC domain-containing protein 19
3swm_D	4e-16	28	91	103	169	NAC domain-containing protein 19
3swp_A	4e-16	28	91	103	169	NAC domain-containing protein 19
3swp_B	4e-16	28	91	103	169	NAC domain-containing protein 19
3swp_C	4e-16	28	91	103	169	NAC domain-containing protein 19
3swp_D	4e-16	28	91	103	169	NAC domain-containing protein 19
4dul_A	4e-16	28	91	100	166	NAC domain-containing protein 19
4dul_B	4e-16	28	91	100	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G199000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235908	1e-161	AC235908.2 Glycine max clone GM_WBc0208D21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003528094.1	2e-66	NAC domain-containing protein 83
Refseq	XP_028236759.1	2e-66	NAC domain-containing protein 83-like
TrEMBL	K7KL84	1e-122	K7KL84_SOYBN; Uncharacterized protein
STRING	GLYMA04G37590.2	1e-123	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-19	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Glyma.04G199000.1.p