PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G201700.1.p
Common NameGLYMA_04G201700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 202aa    MW: 22438.3 Da    PI: 9.2529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G201700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-192574255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +g+W+AeI+dp+    + +r++lg+f tae Aa a+++a+++++g
  Glyma.04G201700.1.p 25 HYRGVRQRP-WGKWAAEIHDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 74
                         7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-322483IPR001471AP2/ERF domain
PfamPF008471.1E-132574IPR001471AP2/ERF domain
PROSITE profilePS5103224.4082582IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-212583IPR016177DNA-binding domain
CDDcd000183.65E-192583No hitNo description
SMARTSM003801.9E-362588IPR001471AP2/ERF domain
PRINTSPR003671.1E-112637IPR001471AP2/ERF domain
PRINTSPR003671.1E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTTIDGDSNH NNNNYDDGRS VRRRHYRGVR QRPWGKWAAE IHDPKKAARV WLGTFETAEA  60
AALAYDEAAL RFKGSKAKLN FPERVQGTAS EFGYLTNQYM SSSSTNSNPI APHLTTQETY  120
SPSHFQYAQQ QFMSGGSNSF SNQDMLRFYG GDNMFVSSQQ SASSSSSTAL SQQQQEELLK  180
FSMQFGGSSH SNHSGNWRGG H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-272485466ATERF1
3gcc_A2e-272485466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G201700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-87AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522452.11e-133ethylene-responsive transcription factor ERF113
TrEMBLA0A0R0KHZ91e-148A0A0R0KHZ9_SOYBN; Uncharacterized protein
STRINGGLYMA04G37866.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.19e-23ERF family protein