PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G211200.1.p
Common NameGLYMA_04G211200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 148aa    MW: 16887.8 Da    PI: 6.6746
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G211200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB74.81.3e-231765250
                NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtsea 50
                         +eqdrflPianv+r mkk++P+n kiskdaketvqecvsefisf  +e 
  Glyma.04G211200.1.p 17 KEQDRFLPIANVGRFMKKAIPGNVKISKDAKETVQECVSEFISFKYKEI 65
                         89******************************************88775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-211360IPR009072Histone-fold
SuperFamilySSF471132.72E-141360IPR009072Histone-fold
PfamPF008083.6E-132260IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEDESHSNLP NGTCSNKEQD RFLPIANVGR FMKKAIPGNV KISKDAKETV QECVSEFISF  60
KYKEIEGEKI NIPKQQRSEQ RLHQQQHQHP HQDQNNNLPL SSVYSSPNLI SQPPYVATDQ  120
LFFLPFSPNS IQKQLQPQDQ IDSVGQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-171760245Transcription factor HapC (Eurofung)
4g92_B6e-171760245Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G211200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361313.11e-73nuclear transcription factor Y subunit B-3-like
SwissprotQ9SIT94e-25NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A0R0KIC71e-104A0A0R0KIC7_SOYBN; Uncharacterized protein
STRINGXP_007137789.12e-60(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-24nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]