PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G214100.1.p
Common NameGLYMA_04G214100, LOC100779374
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 244aa    MW: 27729.3 Da    PI: 6.5758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G214100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61e-08133173954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Glyma.04G214100.1.p 133 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 173
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-14129182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-10130178No hitNo description
PfamPF000104.3E-6134173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDINESITST FSNVVNSTWN HEKMGTEEHN IILHDHHQIP KGVGIWPHYN YPLHNIQPSS  60
SSNVAPSSSN FLTDILGVHF EEEEDEEEEE LGAMKEMMYK MAVMQPVDID PASVRKPKRR  120
NVRISDDPQS VAARHRRERI SEKIRILQRL VPGGTKMDTA SMLDEAIRYV KFLKRQIRFL  180
QSTPPPPINC NVGAAPNSEY YWPFAPNMLH SSTTTFIDMP VIGMEFNTRS HGHAGDSIHL  240
RQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G214100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522492.10.0transcription factor HEC3
RefseqXP_028227089.10.0transcription factor HEC3-like
TrEMBLA0A445L3J10.0A0A445L3J1_GLYSO; Transcription factor HEC3
TrEMBLK7KLH50.0K7KLH5_SOYBN; Uncharacterized protein
STRINGGLYMA04G39210.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.11e-47bHLH family protein