PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G218400.4.p
Common NameGLYMA_04G218400, LOC100127389
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 194aa    MW: 21721.8 Da    PI: 9.9162
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G218400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.22.1e-10157178122
                          ---SS-EEEEEEE--TT-SS-E CS
                 WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                          ldDgy+WrKYGqK+vk++++p 
  Glyma.04G218400.4.p 157 LDDGYKWRKYGQKVVKNTQHPS 178
                          59*****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-12142178IPR003657WRKY domain
SuperFamilySSF1182902.75E-9149178IPR003657WRKY domain
PROSITE profilePS5081112.036152177IPR003657WRKY domain
SMARTSM007740.0018157190IPR003657WRKY domain
PfamPF031061.7E-6158178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MMSTTSQTNV NHSLFEEQDQ IPTQMGLFNI PFPPNQTYPP LGCQTGTLKS ISAIAPSLSS  60
ATSFSETLLS TAVQRPREDL TSNLLAGGGG QLLSLNRSRV NSWAWEEVSD CLMGKRIGGD  120
DNHHLGVSAM KMKKMKARRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPSAT  180
CCRNYKLLFR WKD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.34740.0meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G218400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195811e-123EU019581.1 Glycine max WRKY45 (WRKY45) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630376.11e-145probable WRKY transcription factor 13 isoform X3
SwissprotQ9SVB73e-26WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0R0KHP61e-144A0A0R0KHP6_SOYBN; Uncharacterized protein
STRINGGLYMA04G39621.11e-130(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.19e-20WRKY DNA-binding protein 13