PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G218700.1.p
Common NameGLYMA_04G218700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 197aa    MW: 22521.5 Da    PI: 6.3051
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G218700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-29110168159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDgy+WrKYG+K+vk++++pr+YY+C+ +gC+vkk+ver+++d ++v +tY g Hnhe
  Glyma.04G218700.1.p 110 MDDGYKWRKYGKKTVKNNPNPRNYYKCSGEGCNVKKRVERDRDDSNYVLTTYDGVHNHE 168
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-3197170IPR003657WRKY domain
SuperFamilySSF1182902.09E-27102170IPR003657WRKY domain
PROSITE profilePS5081130.928105170IPR003657WRKY domain
SMARTSM007741.6E-32110169IPR003657WRKY domain
PfamPF031064.4E-23111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDYYFGNPNP KPYDNRHSAV VNTESPSSEF MLSDYLVLED AVDNQESWSQ STETESSEKG  60
NSSDVSHGFG DATFSNTNMH IKCENNGIKR KKEEVSQMIT FRTRSQLEVM DDGYKWRKYG  120
KKTVKNNPNP RNYYKCSGEG CNVKKRVERD RDDSNYVLTT YDGVHNHESP STAYYSQIPL  180
VHSNHDWPQL HPSANS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24101171878Probable WRKY transcription factor 4
2lex_A2e-24101171878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268460.0cotyledon| epicotyl
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO229303600.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G218700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3226910.0DQ322691.1 Glycine max WRKY21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237327.21e-147WRKY transcription factor 21
RefseqXP_028229740.11e-147probable WRKY transcription factor 50
SwissprotQ93WU91e-41WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A445L3E71e-144A0A445L3E7_GLYSO; Putative WRKY transcription factor 51
TrEMBLI1JY761e-145I1JY76_SOYBN; Uncharacterized protein
STRINGGLYMA04G39650.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.18e-44WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]