PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G226700.3.p
Common NameGLYMA_04G226700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 383aa    MW: 43528.4 Da    PI: 4.5639
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G226700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52221481127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrF+Ptdeelv++yL++k++g+  e+  vi+e+d++k+ePwd+p  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgk
  Glyma.04G226700.3.p  22 LPLGFRFRPTDEELVNYYLRQKINGNGREV-WVIREIDVCKWEPWDMPglSVVQTKDPEWFFFCPQDRKYPNGHRLNRATNNGYWKATGK 110
                          699************************999.89***************6447788888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          d++++s ++ l+g+kktLvfy+grapkg++t+Wvmheyr
  Glyma.04G226700.3.p 111 DRKIKS-GTILIGMKKTLVFYTGRAPKGNRTNWVMHEYR 148
                          ******.99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-6117172IPR003441NAC domain
PROSITE profilePS5100556.18222172IPR003441NAC domain
PfamPF023651.0E-2823148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGSVDCYPSR VDDAAVVSLD SLPLGFRFRP TDEELVNYYL RQKINGNGRE VWVIREIDVC  60
KWEPWDMPGL SVVQTKDPEW FFFCPQDRKY PNGHRLNRAT NNGYWKATGK DRKIKSGTIL  120
IGMKKTLVFY TGRAPKGNRT NWVMHEYRPT LKELDGTNPG QNPYVLCRLF KKHDESLEVS  180
HCDEAEPTAS TPVAAYYSTE EIQSDLAVVA GSPSQVTEDD KHQSMIPAHS EEAISNVVTP  240
VDRRTDGYDA CDAQNQIELP TAEEFQPLNF DIYYDPRSEL LDGKLFSPVL AHIQPEFHYQ  300
ANIESDGRYG LQYGTNETNM SDFLNSVVNW DQVPFEDPNC QQQSYPLFNV KDNILNSDLD  360
SELANMTVSN SSYTILSFNL SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-452117616169NO APICAL MERISTEM PROTEIN
1ut4_B5e-452117616169NO APICAL MERISTEM PROTEIN
1ut7_A5e-452117616169NO APICAL MERISTEM PROTEIN
1ut7_B5e-452117616169NO APICAL MERISTEM PROTEIN
4dul_A5e-452117616169NAC domain-containing protein 19
4dul_B5e-452117616169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.551110.0flower| hypocotyl| leaf| pod| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}.
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G226700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984320.0BT098432.1 Soybean clone JCVI-FLGm-23K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276211.20.0NAC transcription factor
SwissprotF4JN352e-94NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A0R0KBG90.0A0A0R0KBG9_SOYBN; Uncharacterized protein
STRINGGLYMA04G40450.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.26e-97NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]