PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G233300.1.p

Common Name

GLYMA_04G233300, LOC778114

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 298aa MW: 32304 Da PI: 8.8863

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G233300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	39	98	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Glyma.04G233300.1.p 39 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 98 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	35	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-34	40	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDTAQWAQGI GVVKQPMEGS KPPPPPPPPM LERRARPQKD QALNCPRCNS TNTKFCYYNN 60 YSLSQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSTP PAPPSAPAPT KKLSDLATPN 120 FPQSASQDPK IHQGQDLNLA YPPAEDYSTV SKFIEVPYST ELDKGTTGLH QNPTSSSTTT 180 SASSQLSAME LLKTGIAAAS SRGLNSFMPM YNSTHGFPLQ DFKPPHGLNF SLEGFENGYG 240 GLQGIQEGPT GGARILFPTV EDLKQQVPST NEFDQQNRSQ EGSAHGYWNG MLGGGSW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.4766	0.0	meristem\| root\| somatic embryo\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G233300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857271	0.0	DQ857271.1 Glycine max Dof21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236777.1	0.0	Dof21
Refseq	XP_028229943.1	0.0	dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	A0A445L443	0.0	A0A445L443_GLYSO; Dof zinc finger protein DOF4.6 isoform A
TrEMBL	Q0GLD1	0.0	Q0GLD1_SOYBN; Dof21
STRING	GLYMA04G41170.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-50	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G233300.1.p
Entrez Gene	778114