PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G234600.2.p

Common Name

GLYMA_04G234600, LOC102670540

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 219aa MW: 25089.9 Da PI: 8.803

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G234600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	75.8	5.1e-24	110	157	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++++k+F pi++AAk L+v+lT+LKr+CR++++kRWPhRk+ksl Glyma.04G234600.2.p 110 LKFDEIRKHFGVPITEAAKRLNVGLTMLKRRCRELNVKRWPHRKLKSL 157 899*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.768	95	178	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-22	110	157	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MEISPLEGFS ELDWPYSSNH LCFNEFPDLE NLDLDFSLPP LGEYLEEELD QKPLNIVVSQ 60 GVHCNREKGF GEASSFTIEN GSATASYVQN IIRQRPQPVS SSSKKKTCVL KFDEIRKHFG 120 VPITEAAKRL NVGLTMLKRR CRELNVKRWP HRKLKSLQLL IDNVKEMGLE DEVARVEKHK 180 RLLEKLPGME LSEEAKKLRQ ACFKANYKKR RCMASLQA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G234600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC188370	6e-59	AC188370.9 Glycine max cultivar PI 96983 clone gmp1-120k16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006578896.1	1e-161	protein RKD4 isoform X1
Refseq	XP_006578897.1	1e-161	protein RKD4 isoform X2
TrEMBL	A0A0R0KGN3	1e-160	A0A0R0KGN3_SOYBN; Uncharacterized protein
TrEMBL	K7KLW8	1e-160	K7KLW8_SOYBN; Uncharacterized protein
STRING	GLYMA04G41320.2	1e-160	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-39	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Glyma.04G234600.2.p
Entrez Gene	102670540