PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G238300.1.p
Common NameGLYMA_04G238300, LOC100776906
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 365aa    MW: 40437.1 Da    PI: 5.2149
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G238300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.4e-29130191159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK++ g+ +pr+YYrCt++   gC+++k+v+rs+edp+++eitY+g+H+++
  Glyma.04G238300.1.p 130 LDDGYSWRKYGQKDILGALYPRGYYRCTHRnvqGCMATKQVQRSDEDPTIFEITYRGKHTCT 191
                          59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.548125193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-29127192IPR003657WRKY domain
SuperFamilySSF1182902.09E-26129192IPR003657WRKY domain
SMARTSM007744.7E-42130192IPR003657WRKY domain
PfamPF031061.5E-27131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDNMGDPKSI IHELLQGLEL ARQLQVYLHL PTSSQETRDL LIQKIISTFE KALEMVNCKG  60
PVPAGESSHY PLGAALIRVS DSPLSSSPRS EDSDRDFKDQ DPNAFKKRNT LPRWTKHIRV  120
TPGMGVEGPL DDGYSWRKYG QKDILGALYP RGYYRCTHRN VQGCMATKQV QRSDEDPTIF  180
EITYRGKHTC TMANNVGSSS SPIPPENQEP SLNNTNPQQQ NILQNLEQQQ SDLLLSLRKG  240
LRVQTENLDS PDQQSLVPFR FPLSTNIKIE SQVFPSPVLE NFISSPSYMS SAASGISHFS  300
VSPSGVNSFG GNPNLANSES QINDMIPATT TSAPNSSTVG LEFPFDQFEF DGQNFTFDNP  360
PFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20130190868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.121120.0flower| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G238300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312320.0KT031232.1 Glycine max clone HN_CCL_107 WRKY transcription factor (Glyma06g13090.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523388.10.0probable WRKY transcription factor 30
RefseqXP_028230034.10.0probable WRKY transcription factor 30
TrEMBLA0A445L4Y80.0A0A445L4Y8_GLYSO; Putative WRKY transcription factor 30
TrEMBLK7KLZ50.0K7KLZ5_SOYBN; Uncharacterized protein
STRINGGLYMA04G41701.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.14e-48WRKY DNA-binding protein 30