PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G257100.6.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 177aa    MW: 20644.9 Da    PI: 10.7418
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G257100.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009.2e-32959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaev++i+fss+g+lyeys+
  Glyma.04G257100.6.p  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN 59
                         79***********************************************95 PP
2K-box95.21e-3176158385
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                          +ss + ++e +a+++qqe+akL+++i++Lq+++Rhl+G+ L++L++keL+qLe++Le++l++iRskK+e+ll++ie+ qk+  
  Glyma.04G257100.6.p  76 HSSASTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGLTRIRSKKHEMLLAEIEYFQKRHA 158
                          4566668999**********************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.95161IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-33276IPR002100Transcription factor, MADS-box
CDDcd002659.86E-43278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-33323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-333859IPR002100Transcription factor, MADS-box
PfamPF014867.1E-2484160IPR002487Transcription factor, K-box
PROSITE profilePS5129713.46387170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVSLIVFSS RGRLYEYSNN  60
NIRSTIERYK KACSDHSSAS TTTEINAQYY QQESAKLRQQ IQMLQNSNRH LMGDALSTLT  120
VKELKQLENR LERGLTRIRS KKHEMLLAEI EYFQKRHALL VRRLSWKMKI FASGLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-22182182Myocyte-specific enhancer factor 2B
1tqe_Q1e-22182182Myocyte-specific enhancer factor 2B
1tqe_R1e-22182182Myocyte-specific enhancer factor 2B
1tqe_S1e-22182182Myocyte-specific enhancer factor 2B
6c9l_A1e-22182182Myocyte-specific enhancer factor 2B
6c9l_B1e-22182182Myocyte-specific enhancer factor 2B
6c9l_C1e-22182182Myocyte-specific enhancer factor 2B
6c9l_D1e-22182182Myocyte-specific enhancer factor 2B
6c9l_E1e-22182182Myocyte-specific enhancer factor 2B
6c9l_F1e-22182182Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.407610.0seed coat
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G257100.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3718990.0DQ371899.1 Glycine max MADS domain transporter AGL11 (AGL11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523484.11e-110agamous-like MADS-box protein AGL11 isoform X1
RefseqXP_006579009.11e-110agamous-like MADS-box protein AGL11 isoform X1
RefseqXP_006579010.11e-110agamous-like MADS-box protein AGL11 isoform X1
RefseqXP_006579011.11e-110agamous-like MADS-box protein AGL11 isoform X2
RefseqXP_014630506.11e-110agamous-like MADS-box protein AGL11 isoform X1
SwissprotA0A217EJJ02e-99AG11S_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A368UIB51e-125A0A368UIB5_SOYBN; Uncharacterized protein
STRINGGLYMA04G43640.41e-109(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.18e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  2. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  3. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  4. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]