PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G002700.1.p
Common NameGLYMA_05G002700, LOC100780662
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 391aa    MW: 43972.8 Da    PI: 5.0142
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G002700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.83.2e-30561972128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevik....evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                          p+G++F+P+d el+ e+L++k+   +      +  +e+i+    e++i++++P++Lp  +k++ ++++fF+k+ ++yatg rk+r+    
  Glyma.05G002700.1.p  56 PVGVKFDPSDVELL-EHLAAKCCIGDrephmfI--HEFIPtlegELGICYTHPQNLP-GAKTDGSSVHFFHKTVNAYATGPRKRRKihhq 141
                          89************.889988766554666432..333441111447**********.55678899*******************86777 PP

                  NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               ++ +W++tg++k+v++ +g ++g kk++v+y  +++ +k+ kt+Wvmh+y+l
  Glyma.05G002700.1.p 142 dgmtEEHVRWHKTGRTKAVIE-DGVHKGFKKIMVLYirSKKGSKPYKTNWVMHQYHL 197
                          777444788***********9.999***********7655667777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-3640216IPR003441NAC domain
PROSITE profilePS5100529.71555216IPR003441NAC domain
PfamPF023651.3E-1256197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MARSWLIDIG GFARKVKNTN LSTDDQIKDC GTYLECQKCH YHIDNNDVSH EWPGFPVGVK  60
FDPSDVELLE HLAAKCCIGD REPHMFIHEF IPTLEGELGI CYTHPQNLPG AKTDGSSVHF  120
FHKTVNAYAT GPRKRRKIHH QDGMTEEHVR WHKTGRTKAV IEDGVHKGFK KIMVLYIRSK  180
KGSKPYKTNW VMHQYHLGSE EDEKDDEYVV SKIFYQRQKQ SEKNEENTVV EDSNIAAQAG  240
PRTPKPNPPT RPCTGKCDDN FDENELLSFI QDAKPIPGES HAPPYDVQDE DNKDDPAWLA  300
GESQADFDGL EDILLCKDML DSSSLLNHSG LSSTYNANAN KLVAPGTDND YASYGVSVLD  360
TLEFDTPPDF DLSNLQFGSQ DSTLQWIDTP *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.391080.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G002700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0156430.0AP015643.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0599, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579788.10.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLK7KNP90.0K7KNP9_SOYBN; Uncharacterized protein
STRINGGLYMA05G09110.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.14e-89NAC domain containing protein 44