PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G004400.2.p

Common Name

GLYMA_05G004400, LOC100788656

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 150aa MW: 16344.1 Da PI: 6.3837

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G004400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112.6	2.6e-35	2	87	14	99
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ Glyma.05G004400.2.p 2 PDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQVLRLQKELDATNA 87 79*******************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.253	1	89	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-34	2	86	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MPDCIFAPYF PPEEPHKFAN VHKIFGASNV SKLLNEVQPH QREDAVNSLA YEAEARIKDP 60 VYGCVGAISV LQKQVLRLQK ELDATNADLI RYSACNEIPN TTTHHGGRRM SDDGGGGGSS 120 LAHSHGFYYP SNWNNDPCGN SNGYPRGDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-53	1	98	23	119	LOB family transfactor Ramosa2.1
5ly0_B	1e-53	1	98	23	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G004400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-100	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006579776.1	1e-110	LOB domain-containing protein 25
Refseq	XP_014630864.1	1e-110	LOB domain-containing protein 25
Refseq	XP_028231096.1	1e-110	LOB domain-containing protein 25-like
Refseq	XP_028231097.1	1e-110	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	1e-57	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A445KHB7	1e-108	A0A445KHB7_GLYSO; LOB domain-containing protein 25 isoform A
TrEMBL	K7KNN7	1e-108	K7KNN7_SOYBN; Uncharacterized protein
STRING	GLYMA05G08870.2	1e-109	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	6e-58	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Glyma.05G004400.2.p
Entrez Gene	100788656

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]