PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G006100.1.p
Common NameGLYMA_05G006100, LOC100305972
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 207aa    MW: 23667.3 Da    PI: 8.0122
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G006100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Glyma.05G006100.1.p 17 KGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYL 64
                         79********************************************97 PP
2Myb_DNA-binding56.47e-1870113146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE++l++++++++G++ W++Ia++++ gRt++++k++w++
  Glyma.05G006100.1.p  70 RGNITPEEQLLIIELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 113
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-231067IPR009057Homeodomain-like
PROSITE profilePS5129417.2821264IPR017930Myb domain
SuperFamilySSF466892.51E-3014111IPR009057Homeodomain-like
SMARTSM007178.6E-131666IPR001005SANT/Myb domain
PfamPF002491.0E-151764IPR001005SANT/Myb domain
CDDcd001674.33E-101964No hitNo description
PROSITE profilePS5129425.64165119IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2568119IPR009057Homeodomain-like
SMARTSM007172.5E-1669117IPR001005SANT/Myb domain
PfamPF002491.0E-1670113IPR001005SANT/Myb domain
CDDcd001674.00E-1374113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDKKPCNSSS HDPEVRKGPW TMEEDLILIN YIANHGEGVW NSLAKASGLK RTGKSCRLRW  60
LNYLRPDVRR GNITPEEQLL IIELHAKWGN RWSKIAKHLP GRTDNEIKNF WRTRIQKHIK  120
QAETSQQHGN SENNDHQAST STSKVSTMAH PNETFSPPSY QGTFEPFQPQ FPTITDQSSC  180
CTTTNDNNNY WSIEDIWSSM QLLNGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261211922128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.331980.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G006100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0898410.0BT089841.1 Soybean clone JCVI-FLGm-2P22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235699.11e-155transcription factor MYB99
RefseqXP_028231123.11e-155myb-related protein 305-like
SwissprotP813911e-91MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A445KHI31e-153A0A445KHI3_GLYSO; Myb-related protein 305
TrEMBLC6SXE71e-153C6SXE7_SOYBN; Uncharacterized protein
STRINGGLYMA05G08690.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-89myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]