PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G015900.1.p
Common NameGLYMA_05G015900, LOC100807374
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 205aa    MW: 22823.1 Da    PI: 9.783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G015900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.4e-164998255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ GVr+++ +grW AeI+d s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Glyma.05G015900.1.p 49 KFLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDKAEEAALAYDCAARLLRG 98
                         789******.7*********42...36**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.93E-3148108No hitNo description
PROSITE profilePS5103219.7349106IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1949107IPR016177DNA-binding domain
SMARTSM003802.7E-3249112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2749107IPR001471AP2/ERF domain
PRINTSPR003675.3E-75061IPR001471AP2/ERF domain
PfamPF008474.6E-105098IPR001471AP2/ERF domain
PRINTSPR003675.3E-77288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MENIDPSKFS HQSQNQNKNN LPLMPIEIDK SYKKRAIKVP KVANKSEKKF LGVRQRPSGR  60
WIAEIKDSSQ KLRLWLGTFD KAEEAALAYD CAARLLRGRN AKTNFPNHGT MNTHEEDCSL  120
LGKNPRAYQL LKHAVMKNHA LSSSLYSTVV PWKNQIMMRD EFDSLVEETI VCSIPEQGSG  180
CCGISFGSSK VYSSVVVAPS FSAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1548106160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-15491131479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G015900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968630.0BT096863.1 Soybean clone JCVI-FLGm-15D24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631557.11e-153ethylene-responsive transcription factor ERN3
RefseqXP_028230920.11e-153ethylene-responsive transcription factor ERN3-like
TrEMBLA0A0R0JX391e-151A0A0R0JX39_SOYBN; Uncharacterized protein
STRINGGLYMA05G07690.21e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-18related to AP2 11