PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G017800.1.p
Common NameGLYMA_05G017800, LOC100800999
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 549aa    MW: 60264.7 Da    PI: 9.6546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G017800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.81.6e-17265314255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Glyma.05G017800.1.p 265 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 314
                          889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.3E-24260335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-18261334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.653263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-15265318No hitNo description
PfamPF000104.9E-15265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MELPQARPLG TEGRKPTHDF LSLYSNSTAQ QDPRPPSQGS YLKTHDFLQP LERVETKASA  60
KEEATDEISS VVQKPRSPSV EHLLPGGIGT YSISHISYVN NNNNNNQRVP KPETSSLYGR  120
QATSTDRNEE NSNCSSYTSS GFTLWEESSG KRGKTGKENN AGEKPSLGES AAKLGQWTTT  180
ERTSQSFSNN RHGSFSSRSS SQTTGLKNQS FIEMMKSARD SAQNEVLESE ETFFLKKEPS  240
SNTQRAELLV KVDGKSTDQK PNTPRSKHSA TEQRRRSKIN DRFQMLRELI PHSDQKRDKA  300
SFLLEVIEYI HFLQEKVHKY EGSFQGWSNE PERLMPWRNN DKPAESFQPR GTDNGSSPSP  360
TIPGSTQNVE SGLSTATTSK TMDHQAGKMN KAFPIPIPSQ LNFFTPTQIG GPGGVVSQLT  420
HRSASDAENT KYQPSVECQT MTATNEKLKE KELTIEGGAI SISSVYSKGL LHTLTHALQS  480
SGVDLSQASI SVQIELGKQA NIRSNVPVSV CGAKDGAVPS NNQKMMRSRV ASSGKSDQAV  540
KKLKTCRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.208320.0cotyledon| flower| hypocotyl| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G017800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-110AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524496.10.0transcription factor BIM1 isoform X1
SwissprotQ9LEZ31e-130BIM1_ARATH; Transcription factor BIM1
TrEMBLI1K1610.0I1K161_SOYBN; Uncharacterized protein
STRINGGLYMA05G07490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-127bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]