PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G022700.1.p
Common NameGLYMA_05G022700, LOC102669916
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 570aa    MW: 62915.5 Da    PI: 7.8886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G022700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00088480502123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C k+F++   L  H r+H
  Glyma.05G022700.1.p 480 HECPICLKVFPSGQALGGHKRSH 502
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0061335IPR007087Zinc finger, C2H2
SMARTSM003550.381335IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7851335IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.36797124IPR007087Zinc finger, C2H2
SMARTSM003550.05297119IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.4E-598123No hitNo description
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF139128.2E-799121IPR007087Zinc finger, C2H2
SuperFamilySSF576679.38E-7391413No hitNo description
PROSITE profilePS501579.868391418IPR007087Zinc finger, C2H2
PfamPF139125.8E-11391415IPR007087Zinc finger, C2H2
SMARTSM003550.14391413IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280393413IPR007087Zinc finger, C2H2
SuperFamilySSF576679.38E-7475502No hitNo description
PfamPF139123.5E-13480503IPR007087Zinc finger, C2H2
SMARTSM003550.071480502IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995480502IPR007087Zinc finger, C2H2
PROSITE patternPS000280482502IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MEGDHRIHQE LKHACKFCGK CFPCGRSLGG HMRSHITNFS SEMNEKEKLS SSHNNGGDKD  60
SEAAAAANTA GYGLREKPKK TWRISDYSSE DPLVFDKFCK ECGKGFQSWK ALFGHMKCHS  120
EKERVSNSLE DQDSWTNAKV VMDSQSDNEA TAPNKRRRSK RRTRYTVVAS SAAAAAATTT  180
SSVVSFANPS SSLSEAEQEQ EEVAMSLMML SRDVSPWSGP HSVAESSDNN SAYFEARSSV  240
RTNLITKFDQ AKLIKQSDNK WEVGNSENPN STRGKSSQLL TTTTATTITT EIPENGFRVN  300
KNGVSNKGYE KAYKSELEYV SALEDSEGEH RRSRRVNGTE SALSKSVTTT GKKYSSIKTK  360
FSGSELKSNK NWMDKASEAE SSKNSNKRGK FECTTCNKIF HSYQALGGHR ASHKKIKGCF  420
ASRNESSENS IETDLSPDPI ITENKLMKNG DSECVVEHQH GASFHNEVET VNESKKSKGH  480
ECPICLKVFP SGQALGGHKR SHMVGGSESR SFQTIVLQEP VAEIRDFLDL NLPAATEEES  540
NSHADSNSNR PWWIVEDNHK QEALVGLIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153160NKRRRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G022700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9671250.0KC967125.1 Glycine max C2H2-type zinc finger protein 4 (ZFP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579519.10.0uncharacterized protein LOC102669916
RefseqXP_028231330.10.0uncharacterized protein LOC114411819
TrEMBLA0A445KIZ60.0A0A445KIZ6_GLYSO; Zinc finger protein ZAT4
TrEMBLI1JZK40.0I1JZK4_SOYBN; Uncharacterized protein
STRINGGLYMA05G00600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-51C2H2-like zinc finger protein