PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G025500.2.p
Common NameGLYMA_05G025500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 349aa    MW: 39185.1 Da    PI: 7.2032
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G025500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.12.3e-55161401129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL kkv ++k+ + ++i evd++k+ePwdLp+k+  +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk
  Glyma.05G025500.2.p  16 LPPGFRFHPTDEELISHYLYKKVIDTKFCA-RAIGEVDLNKSEPWDLPSKM--GEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDK 102
                          79*************************988.89***************655..889********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ +++lvg+kktLvfy+grapkgek++Wvmheyrle
  Glyma.05G025500.2.p 103 EIFR-GKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 140
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6312164IPR003441NAC domain
PROSITE profilePS5100559.76516164IPR003441NAC domain
PfamPF023652.1E-2917139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MENVPAVCKE DDQMDLPPGF RFHPTDEELI SHYLYKKVID TKFCARAIGE VDLNKSEPWD  60
LPSKMGEKEW YFFCVRDRKY PTGLRTNRAT EAGYWKATGK DKEIFRGKSL VGMKKTLVFY  120
RGRAPKGEKS NWVMHEYRLE GKFSAHNLPK TAKNEWVICR VFQKSSAGKK THISGIMRLD  180
SFANELGSSA LPPLSDSSPS IGNTKPLNDS AYVPCFSNPI DVQRNQEGVF DSFTNSMYGV  240
SSNPMDILPR MPPSGSFYST QGVQAAPNFA FPGSVYTLQD HTILRALCEN NGYKPERDMI  300
SVSQETGLTT DINAETSSNF DVGWRPFENH NHASVSVAPL DLDGLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-531317014171NO APICAL MERISTEM PROTEIN
1ut4_B5e-531317014171NO APICAL MERISTEM PROTEIN
1ut7_A5e-531317014171NO APICAL MERISTEM PROTEIN
1ut7_B5e-531317014171NO APICAL MERISTEM PROTEIN
3swm_A5e-531317017174NAC domain-containing protein 19
3swm_B5e-531317017174NAC domain-containing protein 19
3swm_C5e-531317017174NAC domain-containing protein 19
3swm_D5e-531317017174NAC domain-containing protein 19
3swp_A5e-531317017174NAC domain-containing protein 19
3swp_B5e-531317017174NAC domain-containing protein 19
3swp_C5e-531317017174NAC domain-containing protein 19
3swp_D5e-531317017174NAC domain-containing protein 19
4dul_A5e-531317014171NAC domain-containing protein 19
4dul_B5e-531317014171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.627080.0seed coat
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G025500.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619250.0EU661925.1 Glycine max NAC domain protein (NAC28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524726.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-150NC100_ARATH; NAC domain-containing protein 100
TrEMBLI1JZN40.0I1JZN4_SOYBN; Uncharacterized protein
STRINGGLYMA05G00930.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-145NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]