PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G036800.1.p
Common NameGLYMA_05G036800, LOC100811485
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 192aa    MW: 21834.4 Da    PI: 9.5756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G036800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-091766654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         + +Er+RR +++s  ++L + +P+ + k+++  ls  + L +A+ YIk L
  Glyma.05G036800.1.p 17 KTIERNRRIHMKSLCFKLVSTIPSnDLKPTKDMLSQQDQLDLATTYIKRL 66
                         689*********************886777777***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-9478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-4971No hitNo description
PROSITE profilePS508889.2041166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-91681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-61766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MKKPNTSTSG SPKLDRKTIE RNRRIHMKSL CFKLVSTIPS NDLKPTKDML SQQDQLDLAT  60
TYIKRLKERI EKLKGEKEKI MNMMMSSNQN NNSIFNIGSQ LPLLEIKDLG SGIEVMLISG  120
LNKNFMLYEV ISVLEEEGAE VVTANFSTVA DKIFYTVHAQ VKISRVGVEP TRVYQRLQEL  180
IAPLEIWEYI P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116KKPNTSTSGSPKLDRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.387550.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G036800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959830.0BT095983.1 Soybean clone JCVI-FLGm-15G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525498.11e-139transcription factor bHLH162
RefseqXP_028231504.11e-139transcription factor bHLH162-like
TrEMBLA0A445KJN21e-138A0A445KJN2_GLYSO; Transcription factor bHLH162
TrEMBLK7KMP71e-138K7KMP7_SOYBN; Uncharacterized protein
STRINGGLYMA05G02110.21e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-27bHLH family protein