PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G051700.2.p
Common NameGLYMA_05G051700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 203aa    MW: 22246.5 Da    PI: 4.1895
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G051700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-1018422247
                         T-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                         ++W++Ia++++ gRt++++k++w+++
  Glyma.05G051700.2.p 18 ERWSKIAARLP-GRTDNEIKNHWNTH 42
                         37*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.405147IPR017930Myb domain
SuperFamilySSF466891.56E-91552IPR009057Homeodomain-like
PfamPF002493.0E-81842IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-141858IPR009057Homeodomain-like
CDDcd001674.83E-71943No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSSTILTPLS LACKGSNERW SKIAARLPGR TDNEIKNHWN THIKKKLLKM GIDPVTHEPL  60
NKQAAASSQD SSSSPAEHLP QPGNNLDDQV KETNGVLLNS EENSSSSQAE NSSGDDSLLL  120
ESICSDDSLL NSMWLDETPL VEALWDTTPN LENTNNNMSL LPSWEENCAW LLDCQDFGIH  180
DFGFNEIEAN ALQTVGMKEE GH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.394450.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G051700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0988500.0BT098850.1 Soybean clone JCVI-FLGm-16B22 unknown mRNA.
GenBankKC7514530.0KC751453.1 Glycine max cultivar Jilin 32 transcription factor MYBJ1 (MYBJ1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241087.11e-130protein ODORANT1-like
RefseqXP_028231671.11e-130protein ODORANT1-like
TrEMBLK7KMZ71e-144K7KMZ7_SOYBN; Uncharacterized protein
STRINGGLYMA05G03780.11e-130(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.18e-31myb domain protein 85