PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G056000.1.p

Common Name

GLYMA_05G056000, LOC100786175

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

YABBY

Protein Properties

Length: 215aa MW: 23919.3 Da PI: 7.5558

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G056000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	229.3	9.4e-71	11	178	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 d+ seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++ +++ hl++s+ + ++ l+ + +++++ Glyma.05G056000.1.p 11 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQTN 100 577899*********************************************************9988666665555555555555555 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s++ ++ + +e+pr p ++rPPekrqrvPsaynrfik+eiqrik+ nPdi+hreafsaaaknWahfP+ihfgl Glyma.05G056000.1.p 101 LSASNEFSMPARIAADELPR-PIMNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGL 178 55555554445667778887.668***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-69	15	178	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-7	121	171	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.5E-4	127	170	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSSSSTTLSL DHLPPSEQLC YVHCNICDTV LAVSVPCTSL FKTVTVRCGH CTNLLPVNMR 60 GLLMPSPTQF HLGHSFFSPS HNLLEEIPNP SPNFLMNQTN LSASNEFSMP ARIAADELPR 120 PIMNRPPEKR QRVPSAYNRF IKDEIQRIKS VNPDITHREA FSAAAKNWAH FPHIHFGLMP 180 DQTVKKTNVC QQEGEEVLMK DGFYASANVG VSPY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.51909	0.0	cotyledon\| flower\| hypocotyl\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269\|PubMed:17216490, ECO:0000269\|PubMed:17351053}.

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G056000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ617272	1e-167	FJ617272.1 Lotus japonicus YABBY1 protein (YABBY1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001344728.1	1e-160	protein YABBY 7 isoform 1
Refseq	XP_028231726.1	1e-160	protein YABBY 4-like isoform X1
Swissprot	Q01JG2	1e-80	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-80	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A0B2P539	1e-159	A0A0B2P539_GLYSO; Protein YABBY 5
TrEMBL	I1K0L1	1e-159	I1K0L1_SOYBN; Uncharacterized protein
STRING	GLYMA05G04260.1	1e-159	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2040	34	90
Representative plant	OGRP4685	11	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	9e-82	YABBY family protein

Link Out ? help Back to Top
Phytozome	Glyma.05G056000.1.p
Entrez Gene	100786175

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]