PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G056000.2.p

Common Name

GLYMA_05G056000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

YABBY

Protein Properties

Length: 175aa MW: 19329.2 Da PI: 8.0779

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G056000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	198.7	2.4e-61	11	168	2	160
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 d+ seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++ +++ hl++s+ + ++ l+ + +++++ Glyma.05G056000.2.p 11 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQTN 100 577899*********************************************************9988666665555555555555555 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 s+s++ ++ + +e+pr p ++rPPekrqrvPsaynrfik+eiqrik+ nPdi+hreafsaaakn Glyma.05G056000.2.p 101 LSASNEFSMPARIAADELPR-PIMNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNV 168 55555554445667778887.668******************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-60	15	167	IPR006780	YABBY protein
SuperFamily	SSF47095	6.84E-6	121	166	IPR009071	High mobility group box domain
CDD	cd00084	9.42E-4	132	159	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MSSSSTTLSL DHLPPSEQLC YVHCNICDTV LAVSVPCTSL FKTVTVRCGH CTNLLPVNMR 60 GLLMPSPTQF HLGHSFFSPS HNLLEEIPNP SPNFLMNQTN LSASNEFSMP ARIAADELPR 120 PIMNRPPEKR QRVPSAYNRF IKDEIQRIKS VNPDITHREA FSAAAKNVSI LSPC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.51909	0.0	cotyledon\| flower\| hypocotyl\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269\|PubMed:17216490, ECO:0000269\|PubMed:17351053}.

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G056000.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001344728.1	1e-120	protein YABBY 7 isoform 1
Refseq	XP_028231726.1	1e-120	protein YABBY 4-like isoform X1
Swissprot	Q01JG2	1e-58	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-58	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A0R0K0D7	1e-124	A0A0R0K0D7_SOYBN; Uncharacterized protein
STRING	GLYMA05G04260.1	1e-119	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	6e-55	YABBY family protein

Link Out ? help Back to Top
Phytozome	Glyma.05G056000.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]