PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G070200.4.p
Common NameGLYMA_05G070200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 486aa    MW: 54719.8 Da    PI: 6.8851
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G070200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27247300256
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           +++WtpeLH+ Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Glyma.05G070200.4.p 247 IKVDWTPELHKTFVKAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 300
                          5899****************.********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-27243303IPR009057Homeodomain-like
PROSITE profilePS5129415.562243302IPR017930Myb domain
SuperFamilySSF466895.55E-18245303IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-24246301IPR006447Myb domain, plants
PfamPF002491.1E-7249298IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MNDLEGNTPC DFKQSLLEHH DEVHSVEFLR KPLSEDKLRN IWQHVVHKAF NARASILSES  60
LKPVKESVVS MLQLQTDDEQ HESRVSRDIE KVSRFVDNDH ELSSGNDKYP APSTPQLRQG  120
TRLLDDGDCQ EQTNCSTGKE SGEHEGESKS VETTCGNLNA ESTPQQRKSE ITLVREEVES  180
TPQQRKSEIT LVKEEVDIVD ASKGESVASP HTQKRKVLSN TDRNTKALIK VGVHSDSCEI  240
RGNQKKIKVD WTPELHKTFV KAVEQLGIDQ AIPSRILELM KVEGLTRHNV ASHLQKYRMH  300
KRQILPKEER KWLNLRERSY CVKRPIMAFP PYHSNHTLPL PPVYPMWGQS GSPTAGMQIW  360
GSPGYPFWHT TAENWHWKPF PGMHADAWGC PVLPLPPPQT PGFPYSQNMP SLLNADAVDH  420
TFTMPQSSFE HYPAEEVVDK VVKEAISKPW LPLPLGLKPP SPDSVLAELS RQGISNIPPK  480
GSNSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-16251300655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.80000.0root| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G070200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-106AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579672.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_028231878.10.0two-component response regulator-like APRR2 isoform X1
TrEMBLK7KNA80.0K7KNA8_SOYBN; Uncharacterized protein
STRINGGLYMA05G06070.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.62e-75ARR-B family protein