PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G072100.1.p

Common Name

GLYMA_05G072100, LOC102659753

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 817aa MW: 94129.7 Da PI: 6.7759

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G072100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.6	8.6e-23	139	225	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA GFs+rk+ +ks+ ng +++r+++C ++g+r +++ + r+ ++etrtgC a+++++++ +gk++v+++e+eHnHel+ Glyma.05G072100.1.p 139 CYSEYAVLNGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPSKNGT--YLRKLKQETRTGCLAHMTISRQPNGKFCVINFETEHNHELV 225 7*************************************998877..99999********************************97 PP
2	FAR1	89.7	4.2e-28	272	360	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ ++ +r+r+ tr+gC a+l+++++ dg++++t++e++HnHel+ Glyma.05G072100.1.p 272 EFYNTYAGHVGFSVRKDYVNRSKVDGAVASRRFTCFREGFRHKDKQD-TNVKRPRKDTRIGCLAQLVISRQPDGRYHITHFEEKHNHELV 360 6*****************************************999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-20	139	225	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.7E-25	272	360	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-23	481	574	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.384	761	797	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-5	772	799	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MQDTEPDIKR HPLEDAENEC PISPEVVIDM GQESQTQNHS DFSVSDTNKV IDTENECTSP 60 NVCPVDNSHM EINDECQTSN IFHVDKFPTN VSSGQLCETE NPCATFVTMT STDVKNEEEI 120 CVAPKIGMEF ESEDTAYKCY SEYAVLNGFS IRKDFVNKSR INGAVVSRRY TCHRQGYRPS 180 KNGTYLRKLK QETRTGCLAH MTISRQPNGK FCVINFETEH NHELVTPCTA HMLQSQKRLT 240 FAQAVEANLT KSGLDGVPKL GMGFDSEEHA YEFYNTYAGH VGFSVRKDYV NRSKVDGAVA 300 SRRFTCFREG FRHKDKQDTN VKRPRKDTRI GCLAQLVISR QPDGRYHITH FEEKHNHELV 360 AACRVHMLRS QKKLATTQVE KNIADGSNVL PTSTSESNCK AIEGFVDMDC DPMGHEYKLP 420 FKCTSKMKEG EIEKIKHHFQ IKQSKNPSFF YAFQLDADDQ ITNIFWADTK MMVDYGDFGD 480 VICFDSSYKY YKDFRPFVPF LGINNHQQMT IFGAALLYNE SVESLKWLFR VFIEAMSGRK 540 PKTILTDLDI ITAEAINSIS PQTNHRVCVW HVYQDALKQL SHVSVRSGSF VNDLRSCFFD 600 NEEEDYFVNA WNALLDKYDL WQNEWLQQIY GSRDRWAIAY GRQFFCADMV SMLLRENLTG 660 NLKKYLKHGT DILPLLKYLV KVVTDWHYRE LEANYDMSQH MPPLMGDIIT LKHASAPYTP 720 KIFELFQKEY EACLNLVIKH CTESGSLYNY KVSIYEQVRE YSVTFDSSNK TISCCCMKFE 780 YVGILCCHAL KVLDYRNIRI VPSQYILKRW TKDARV*

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MQDTEPDIKR HPLEDAENEC PISPEVVIDM GQESQTQNHS DFSVSDTNKV IDTENECTSP  60
NVCPVDNSHM EINDECQTSN IFHVDKFPTN VSSGQLCETE NPCATFVTMT STDVKNEEEI  120
CVAPKIGMEF ESEDTAYKCY SEYAVLNGFS IRKDFVNKSR INGAVVSRRY TCHRQGYRPS  180
KNGTYLRKLK QETRTGCLAH MTISRQPNGK FCVINFETEH NHELVTPCTA HMLQSQKRLT  240
FAQAVEANLT KSGLDGVPKL GMGFDSEEHA YEFYNTYAGH VGFSVRKDYV NRSKVDGAVA  300
SRRFTCFREG FRHKDKQDTN VKRPRKDTRI GCLAQLVISR QPDGRYHITH FEEKHNHELV  360
AACRVHMLRS QKKLATTQVE KNIADGSNVL PTSTSESNCK AIEGFVDMDC DPMGHEYKLP  420
FKCTSKMKEG EIEKIKHHFQ IKQSKNPSFF YAFQLDADDQ ITNIFWADTK MMVDYGDFGD  480
VICFDSSYKY YKDFRPFVPF LGINNHQQMT IFGAALLYNE SVESLKWLFR VFIEAMSGRK  540
PKTILTDLDI ITAEAINSIS PQTNHRVCVW HVYQDALKQL SHVSVRSGSF VNDLRSCFFD  600
NEEEDYFVNA WNALLDKYDL WQNEWLQQIY GSRDRWAIAY GRQFFCADMV SMLLRENLTG  660
NLKKYLKHGT DILPLLKYLV KVVTDWHYRE LEANYDMSQH MPPLMGDIIT LKHASAPYTP  720
KIFELFQKEY EACLNLVIKH CTESGSLYNY KVSIYEQVRE YSVTFDSSNK TISCCCMKFE  780
YVGILCCHAL KVLDYRNIRI VPSQYILKRW TKDARV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G072100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006579691.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_028231889.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	A0A0R0JYC7	0.0	A0A0R0JYC7_SOYBN; Uncharacterized protein
TrEMBL	A0A445KKP0	0.0	A0A445KKP0_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRING	GLYMA05G06351.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Glyma.05G072100.1.p
Entrez Gene	102659753