PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G085900.1.p

Common Name

GLYMA_05G085900

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 79aa MW: 9090.69 Da PI: 9.1075

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G085900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	106	2.5e-33	4	78	2	87
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +eqdrflPi nvs imkkv+Panaki k fi f+t+eas+kcqrekrktingddllw ++tlGfedyveplk yl Glyma.05G085900.1.p 4 QEQDRFLPIVNVSHIMKKVMPANAKILK-----------YFINFITGEASNKCQREKRKTINGDDLLWVMTTLGFEDYVEPLKGYL 78 69**********************76...........6*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.9E-28	4	78	IPR009072	Histone-fold
SuperFamily	SSF47113	2.33E-23	6	78	IPR009072	Histone-fold
Pfam	PF00808	2.7E-11	9	62	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.1E-11	26	44	No hit	No description
PRINTS	PR00615	6.1E-11	45	63	No hit	No description
PRINTS	PR00615	6.1E-11	64	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MLPQEQDRFL PIVNVSHIMK KVMPANAKIL KYFINFITGE ASNKCQREKR KTINGDDLLW 60 VMTTLGFEDY VEPLKGYL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-29	1	78	4	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G085900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006586138.1	3e-41	nuclear transcription factor Y subunit B-3
Refseq	XP_006602134.1	2e-41	nuclear transcription factor Y subunit B-3
Refseq	XP_028214205.1	2e-41	nuclear transcription factor Y subunit B-3-like
Refseq	XP_028246114.1	2e-41	nuclear transcription factor Y subunit B-3-like
Swissprot	Q75IZ7	6e-40	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0R0JYX8	8e-52	A0A0R0JYX8_SOYBN; Uncharacterized protein
TrEMBL	A0A445KLE4	8e-52	A0A445KLE4_GLYSO; Nuclear transcription factor Y subunit B-8
STRING	GLYMA08G44140.1	1e-40	(Glycine max)
STRING	GLYMA18G08620.1	7e-41	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-41	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Glyma.05G085900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]