PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G094900.1.p
Common NameGLYMA_05G094900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 255aa    MW: 28222 Da    PI: 8.4787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G094900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08141181954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Glyma.05G094900.1.p 141 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 181
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14133191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14136192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-6142181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-6155186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDVDIVKTSS NNNNMDVMAM MMQMEKFPEL FCDPFYTTSY QETDLLSSGS SSTTSASTLF  60
NNNSIVTTTP PPTTTLVDPT PSNVVQFSKI DDLFQHQHQQ QPMEMIFRIA VMQPVHIDPE  120
SIKPPKRRNV KISKDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIHYVKF  180
LKKQVQTLEQ AGANTSPHSN TNSPNNHVVG AAGFPLGMSS NYSNNSSVNY SSLLMKGGCQ  240
PCQMFGSTSK QLLS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.241780.0cotyledon
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Flowers, especially in gynoecium. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G094900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150346e-81AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524651.11e-127transcription factor HEC1
RefseqXP_028232106.11e-127transcription factor HEC1-like
SwissprotQ9FHA76e-46HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A0R0JZA50.0A0A0R0JZA5_SOYBN; Uncharacterized protein
STRINGGLYMA05G19920.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-39bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  3. Sparks EE,Benfey PN
    HEC of a job regulating stem cells.
    Dev. Cell, 2014. 28(4): p. 349-50
    [PMID:24576420]
  4. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]
  5. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  6. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]
  7. Gaillochet C, et al.
    Control of plant cell fate transitions by transcriptional and hormonal signals.
    Elife, 2018.
    [PMID:29058667]