PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G108600.2.p
Common NameGLYMA_05G108600, LOC100787611
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 564aa    MW: 62333.5 Da    PI: 5.9176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G108600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62.1e-15319370155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.05G108600.2.p 319 SQYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 370
                          78****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-25319380No hitNo description
SuperFamilySSF541711.31E-17319379IPR016177DNA-binding domain
PfamPF008477.4E-10319370IPR001471AP2/ERF domain
PROSITE profilePS5103219.151320378IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-19320378IPR001471AP2/ERF domain
SMARTSM003809.3E-34320384IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MKSMENDDNA DLNNQNNWLG FSLSPQMHNI GVSSHSQPSS AAEVVPTSFY HHTAPLSSYG  60
FYYGLEAENV GLYSALPIMP LKSDGSLYGL ETLSRSQAQA MATTSTPKLE NFLGGEAMGT  120
PHHYECSATE TMPLSLDSVF YIQPSRRDPN NNQTYQNHVQ HISTNQQQQQ QELQAYYSTL  180
RNHDMILEGS KQSQTSDNNN LHVQNMGGDD AVPVPGLKSW EVRNFQASHA HESKMIVPHV  240
EENAGESGSI GSMAYGDLQS LSLSMSPSSQ SSSVTSSHRA SPAVVDSVAM DTKKRGPEKV  300
DQKQIVHRKS IDTFGQRTSQ YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA  360
YDIAAIKFRG ANAVTNFDIT RYDVEKIMAS SNLLSSELAR RNRETDNETQ CIDQNHNKPS  420
AYEDTQEAIL MHQKSCESEN DQWKMVLYQS SQQLEQNPPT IESDRTNQSF AVALDNMFHQ  480
EVEESSKART HVSNPSSLAT SLSSSREGSP DRTSLPMLSG MPSTASKLLA TNPNNVNSWD  540
PSPHLRPALT LPQMPVFAAW TDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.385200.0epicotyl| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G108600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351910.0AC235191.1 Glycine max strain Williams 82 clone GM_WBb0012A18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579963.10.0AP2-like ethylene-responsive transcription factor ANT isoform X5
TrEMBLA0A0R0JTL70.0A0A0R0JTL7_SOYBN; Uncharacterized protein
STRINGGLYMA05G22970.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.16e-42AP2 family protein