PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G108700.1.p
Common NameGLYMA_05G108700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 213aa    MW: 24220.5 Da    PI: 8.7089
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G108700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.92.2e-11189833111
                  NAM  33 vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk...atgkdkevlskkgelvglkktLvfykg 111
                          +i+   +i++++P++L   v+ +  + +fF+  +k+y+tg+rk+r++++       +t  +k+v++ +g+++g+kk+Lv ++ 
  Glyma.05G108700.1.p  18 AIEGEdGICYTHPEKLL-GVTRDGLSKHFFHGPSKAYTTGTRKRRKIQNECDLqggETLWHKPVMV-NGKQKGCKKILVMHQY 98 
                          3666547*********6.666667799******************866443330114444799999.999*********9952 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-148118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEAKNMKSHP LIDEFIPAIE GEDGICYTHP EKLLGVTRDG LSKHFFHGPS KAYTTGTRKR  60
RKIQNECDLQ GGETLWHKPV MVNGKQKGCK KILVMHQYHL GQHEEEKGEV MVSKIFYQTQ  120
PRQCNWSNKS AITSEGSGEP NNNSTGRRDS GSRSCSSKEI VTHRYEMSVV VGVPPMTSFT  180
THHPLDIQQL KLDHFSFIPF KKTFDEVYIH YN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G108700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150443e-85AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028240225.11e-130NAC domain-containing protein 75-like
RefseqXP_028240226.11e-130NAC domain-containing protein 75-like
RefseqXP_028240227.11e-130NAC domain-containing protein 75-like
SwissprotQ9M0F82e-67NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0R0K0J31e-159A0A0R0K0J3_SOYBN; Uncharacterized protein
STRINGGLYMA05G22985.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-69NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]