PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G110700.1.p
Common NameGLYMA_05G110700, LOC100787596
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 337aa    MW: 37746 Da    PI: 6.0218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G110700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.7e-11148195355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er RR++i + f  L  l+P +     kK++K++ L +A++Y+k+L+
  Glyma.05G110700.1.p 148 QDHIIAERMRREKISQQFIALSALIPDL-----KKMDKVSLLGEAIRYVKQLK 195
                          5699************************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.418145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-16148211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15149210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-9149194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.31E-10150199No hitNo description
SMARTSM003531.4E-12151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEESWTSCLC DMEPDDYSFI GQSDIKVDDV NGCLVSPHDV ATALLEKNQQ SLFSRESHSS  60
AAESGLERPF KLPKREQLSQ KIASSSTPSS YILSFDNMNP PTIKVESASK PGTKVVNLEK  120
ALPSKNEPTR PQENKKMGSF ARSSHHTQDH IIAERMRREK ISQQFIALSA LIPDLKKMDK  180
VSLLGEAIRY VKQLKEQVKL LEEQSKRKNE ESVMFAKKSQ VFLADEDVSD TSSNSCEFGN  240
SDDPSSKANF LSLPEVEARV SKKNVLIRIL CEKEKTVLVN IFREIEKLHL SIIYSSALSF  300
GSSVLDTTIV AEMEDEFNMG VKELARNLRV GLMQFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G110700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524708.10.0transcription factor bHLH18
RefseqXP_028232248.10.0transcription factor bHLH18-like
TrEMBLA0A445KMP90.0A0A445KMP9_GLYSO; Transcription factor bHLH25
TrEMBLK7KPK70.0K7KPK7_SOYBN; Uncharacterized protein
STRINGGLYMA05G23330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-55bHLH family protein