PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G110900.1.p

Common Name

GLYMA_05G110900, Glyma05g23530.1, LOC100788128

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 383aa MW: 42121.4 Da PI: 5.1685

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G110900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.2e-11	204	249	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+L Glyma.05G110900.1.p 204 DHIMAERKRREKLSQSFIALAALVPGL-----KKMDKASVLGDAIKYVKEL 249 699**********************.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.478	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-16	204	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-9	204	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-12	205	253	No hit	No description
SuperFamily	SSF47459	5.5E-16	205	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-13	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MMEELNKPMD GSATSWLSDL EMDDYNLFPD ECPLNLNLFD DQEFLSQDIA SALQEQTQTL 60 QQSLSSECPS KTVSNSSTDE TTFDFERPAK LLKTTTSSSC CNSDSSTITK SLSPKLSPSS 120 SFSSFQSQIL SFDNPNPTSS SNTTTQFYGF DCTLNPTQNE MVSVSVPNMR KPRFPTQTAK 180 GSPKNQNFET KTSHGKRSPA HAQDHIMAER KRREKLSQSF IALAALVPGL KKMDKASVLG 240 DAIKYVKELK ERLTVLEEQS KKSRAESVVV LNKPDLSGDD DSSSCDESIG ADSVSDSLFE 300 VESRVSGKEM LLRIHCQKQK GLLVKLLAEI QSHHLFVANS SVLPFGDSIL DITIVAQMGE 360 SYNLTTKELV KNLRVAALKI LS*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MMEELNKPMD GSATSWLSDL EMDDYNLFPD ECPLNLNLFD DQEFLSQDIA SALQEQTQTL  60
QQSLSSECPS KTVSNSSTDE TTFDFERPAK LLKTTTSSSC CNSDSSTITK SLSPKLSPSS  120
SFSSFQSQIL SFDNPNPTSS SNTTTQFYGF DCTLNPTQNE MVSVSVPNMR KPRFPTQTAK  180
GSPKNQNFET KTSHGKRSPA HAQDHIMAER KRREKLSQSF IALAALVPGL KKMDKASVLG  240
DAIKYVKELK ERLTVLEEQS KKSRAESVVV LNKPDLSGDD DSSSCDESIG ADSVSDSLFE  300
VESRVSGKEM LLRIHCQKQK GLLVKLLAEI QSHHLFVANS SVLPFGDSIL DITIVAQMGE  360
SYNLTTKELV KNLRVAALKI LS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5gnj_A	6e-13	204	278	8	80	Transcription factor MYC2
5gnj_B	6e-13	204	278	8	80	Transcription factor MYC2
5gnj_E	6e-13	204	278	8	80	Transcription factor MYC2
5gnj_F	6e-13	204	278	8	80	Transcription factor MYC2
5gnj_G	6e-13	204	278	8	80	Transcription factor MYC2
5gnj_I	6e-13	204	278	8	80	Transcription factor MYC2
5gnj_M	6e-13	204	278	8	80	Transcription factor MYC2
5gnj_N	6e-13	204	278	8	80	Transcription factor MYC2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	213	ERKRRE
2	209	214	RKRREK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.37832	0.0	root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G110900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031106	0.0	KT031106.1 Glycine max clone HN_CCL_80 bHLH transcription factor (Glyma05g23530.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006579969.1	0.0	transcription factor bHLH18
TrEMBL	I1K2I7	0.0	I1K2I7_SOYBN; BHLH transcription factor
STRING	GLYMA05G23530.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11069	12	38
Representative plant	OGRP656	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.05G110900.1.p
Entrez Gene	100788128

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]