PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G111400.1.p
Common NameGLYMA_05G111400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 213aa    MW: 23579.3 Da    PI: 9.8065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G111400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-054163123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C k F++   L  H+++H
  Glyma.05G111400.1.p 41 YSCTFCRKEFRSAQALGGHMNVH 63
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-63868No hitNo description
Gene3DG3DSA:3.30.160.601.9E-43966IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3444168IPR007087Zinc finger, C2H2
SMARTSM003550.00614163IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-54164IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MWNPRDQYHH QDQDQDESWE VRAFAEDTSN IMGTTWPPRS YSCTFCRKEF RSAQALGGHM  60
NVHRRDRARL HQASVPHNNP SFSPTPSFLN ISHQEPFVAN GGLCLLYPFP SPNNNAPFSS  120
LGHNNNACGD SPSTAFSVSS SHSLQYPPMR VPSCSASTSF DFSVAQPAPP AVGRNNNGAP  180
GAAIWLEEMV KKRKEKGAPR TVKKRKKKTS HM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-123663229superman protein
2l1o_A4e-123663229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191207KRKEKGAPRTVKKRKKK
2202206KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.241032e-74cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G111400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-61AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631095.11e-131zinc finger protein 10
RefseqXP_028232252.11e-131zinc finger protein 10-like
TrEMBLA0A0R0K2F81e-157A0A0R0K2F8_SOYBN; Uncharacterized protein
STRINGGLYMA05G23620.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-29C2H2 family protein