PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G112200.1.p
Common NameGLYMA_05G112200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LSD
Protein Properties Length: 124aa    MW: 12889.4 Da    PI: 7.4762
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G112200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.78e-132852125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         C+gCr+lL +P GA+sV+Ca+C++V
  Glyma.05G112200.1.p 28 CSGCRNLLVFPVGATSVCCAVCNAV 52
                         ************************9 PP
2zf-LSD147.13.7e-156791125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         CggC+tlL+Y rGA+sV+C++C+tV
  Glyma.05G112200.1.p 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                         ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.1E-122555IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-102852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.6E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-126791IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MSFPLAPYPT PPAPYTPPAN GVQSQLVCSG CRNLLVFPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEGIVL LIVSLRFKEL CCVCAHACMM  120
DRL*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G112200.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904151e-156BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593714.12e-56protein LOL1
RefseqXP_021593716.12e-56protein LOL1
RefseqXP_021593717.12e-56protein LOL1
RefseqXP_021593718.12e-56protein LOL1
SwissprotQ93ZB11e-47LOL1_ARATH; Protein LOL1
TrEMBLA0A0R0JTR35e-82A0A0R0JTR3_SOYBN; Uncharacterized protein
STRINGcassava4.1_018557m8e-56(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-33lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]