PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G127600.1.p
Common NameGLYMA_05G127600, LOC100787050
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 359aa    MW: 39485.2 Da    PI: 6.8747
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G127600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.6e-33186243259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  Glyma.05G127600.1.p 186 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHP 243
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-35170245IPR003657WRKY domain
SuperFamilySSF1182901.96E-29177245IPR003657WRKY domain
PROSITE profilePS5081132.983180245IPR003657WRKY domain
SMARTSM007747.5E-39185244IPR003657WRKY domain
PfamPF031067.5E-26186243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSVEPKELYY QDLVLDPNIN NQHQGTEAGS NNTMYEKHFS STIIPSDSTA YDSSQAFDPS  60
YMSLTECLQG GMDYNSLATS FGLSPSSSEV FSSVDGNQKP AVEGGDGGGG GGGSETLATL  120
NSSVSSSSSE AGAEEDSGKS KKERQVKTEE GEENSKKGNK EKKKGEKKQK EPRFAFMTKS  180
EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCTVKK RVERSFQDPT TVITTYEGQH  240
NHPVPTSLRG NAAAGMFTPS SLLATPTPLA AGSNFPQDLF LHMHHPHHQY HIHNNLFTTQ  300
STTNTTTATT TTPSSFYSSY NNINNSLLHN QFLPPEYGLL QDIVPSMFHN KTGHHHQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-29175245777Probable WRKY transcription factor 4
2lex_A8e-29175245777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G127600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-103AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524110.10.0WRKY transcription factor 28
RefseqXP_028232422.10.0WRKY transcription factor 28-like isoform X1
SwissprotQ8VWJ26e-73WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A445KN540.0A0A445KN54_GLYSO; WRKY transcription factor 28
TrEMBLI1K3040.0I1K304_SOYBN; Uncharacterized protein
STRINGGLYMA05G25770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.13e-50WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]