PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G134400.1.p
Common NameGLYMA_05G134400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 509aa    MW: 56971.6 Da    PI: 5.4324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G134400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13313359354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h + E++RR+++N ++  Lr l+P++     +K + a+++  A++YI++L
  Glyma.05G134400.1.p 313 TKHFATEKQRREQLNGKYKILRNLIPSP-----TKIDRASVVGDAIDYIREL 359
                          79**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-14308374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.818310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10313359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-11313359No hitNo description
Gene3DG3DSA:4.10.280.102.2E-11313368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-10316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MHEQTGCFDP NTMGESVPFL KDNFPQTLPP SPIVVGNTTN SNNNSLEQNL RLSVEELSYN  60
HYYPQHQEDH VSTYVSGVTA TSIEIPHPQH LGLNMGNSYI NNNNNMDNHL VQEVIDAYPY  120
QLSTWDPATV QELQDIAYAN HTEQQQQQQQ NEQQFQQIET QNCSQSYNNP SSILDPPYPS  180
PDLLNLLHMP RCSASSLLTN PSICLTNPTQ NTPNFQNPMA FLGDLTIGSE NTSASSVLYD  240
PLFHLNLPPQ PPALRELFQS LPRGYSLPTN SRNGSLFAGG DEMEGDGSQL DMGVLEFNRV  300
TPSVGKGRGG KATKHFATEK QRREQLNGKY KILRNLIPSP TKIDRASVVG DAIDYIRELI  360
RTVNELKLLV EKKRYAKERY KRPKTEEDAA ESCNIKPFGD PDGGIRTSWL QRKSKDSEVD  420
VRIIDDDVTI KLFQRKKINC LLFVSKVLDE LQLELHHVAG GHVGEYCSFL FNSKIMEGSS  480
VYASAIANRV IDVLDSQYTA AVPHTNSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G134400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358830.0AC235883.2 Glycine max clone GM_WBc0013D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631531.10.0transcription factor bHLH89
TrEMBLI1K3870.0I1K387_SOYBN; Uncharacterized protein
STRINGGLYMA05G26490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-72bHLH family protein