PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G144500.3.p
Common NameGLYMA_05G144500, LOC100778324
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 584aa    MW: 65677.7 Da    PI: 4.9726
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G144500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like703.7e-22202254155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ +LH++Fv+av+q+ G +   Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Glyma.05G144500.3.p 202 KARVVWSVDLHQKFVKAVNQI-GFD-IGPKKILDLMNVPWLTRENVASHLQKYRL 254
                          68*******************.777.78**************************8 PP
2Response_reg82.11.8e-27201281109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ +++l+++l+k  y ev+++  ++eal++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + +
  Glyma.05G144500.3.p  20 VLVVDDDPTWLRILEKMLKKCLY-EVTTCCLATEALKKLRERKdaYDIVISDVNMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMK 107
                          89*********************.***************888889**********************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ ++el++
  Glyma.05G144500.3.p 108 GVQHGACDYLLKPIRMKELRN 128
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-1432568IPR017053Response regulator B-type, plant
SuperFamilySSF521723.98E-3517142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.6E-4417156No hitNo description
SMARTSM004485.0E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.88619134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2420129IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.99E-3021134No hitNo description
SuperFamilySSF466894.12E-15200258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-25201259IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-19202254IPR006447Myb domain, plants
PfamPF002491.4E-7204253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDNGCFSSPR HDAFPAGLRV LVVDDDPTWL RILEKMLKKC LYEVTTCCLA TEALKKLRER  60
KDAYDIVISD VNMPDMDGFK LLEQVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKRMHE ARDFESHEGF DFEGIHLMRN GSDHSDDGNL FAVEEITSIK  180
KRKDADNKHD DKEFGDHSPM KKARVVWSVD LHQKFVKAVN QIGFDIGPKK ILDLMNVPWL  240
TRENVASHLQ KYRLYLSRLQ KENDQKSSSS GIKHSDSPSK DPGSFSILDT ANKQQNDVAI  300
DSFSYSDGSL LLQMDATSHE GNLKGIVSEP TTEKRRGSTG DIPDPKIQKS SQKSLNQPFT  360
SVESSEANHA VFDCTIPTQY SWSEFPKGPL KEEQKTLVQL EDSLSQLPLH GNGTQHHIHV  420
DQSQSIASIN SNPSITEEEV AAKLETKPLY AGYESDYVSP VSSIGSAVEV FPSQSKSLMV  480
NDQSSEPTFT SNLSLKAQGF NRDCISDLDF YQRNLLLGGE VASAPLEEDL NFFLLQTECY  540
NMNFGLQNID MSEYYDPRLI AEVPSHFYDS ADYSSVDQSL FIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-15198259163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G144500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580107.10.0two-component response regulator ARR11 isoform X2
RefseqXP_028232651.10.0two-component response regulator ARR11-like isoform X2
TrEMBLA0A0R0K1G10.0A0A0R0K1G1_SOYBN; Two-component response regulator
STRINGGLYMA05G27670.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-118response regulator 11