PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G148700.4.p
Common NameGLYMA_05G148700, LOC100804540
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 167aa    MW: 19004.9 Da    PI: 10.5423
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G148700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.7e-28958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krienksnrq+tfskRr+g++KKA ELS+LCda+ a++ifsstgklye +
  Glyma.05G148700.4.p  9 KRIENKSNRQITFSKRRKGLMKKARELSILCDAKLALLIFSSTGKLYELC 58
                         79*********************************************966 PP
2K-box24.21.4e-091081524185
                K-box  41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                           +Le Ls+ +L++Le+ ++++l++iRs K   + +  e+ +k   
  Glyma.05G148700.4.p 108 SELEHLSVTDLMELEKLVHSALSRIRSAKRIAWNRRAEKKKKSPS 152
                          68***************************9999888888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.19E-29175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.025161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-35160IPR002100Transcription factor, MADS-box
CDDcd002657.63E-34270No hitNo description
PRINTSPR004041.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-599150IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGKKKLEIKR IENKSNRQIT FSKRRKGLMK KARELSILCD AKLALLIFSS TGKLYELCNG  60
DSLAEVVQRY WDNLGASGTD TKGLRFEIAD IWSDEAFSQL VQSHFGVSEL EHLSVTDLME  120
LEKLVHSALS RIRSAKRIAW NRRAEKKKKS PSDVTRNLRV AHNRCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19172171MEF2C
5f28_B3e-19172171MEF2C
5f28_C3e-19172171MEF2C
5f28_D3e-19172171MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.372510.0leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G148700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2525690.0EU252569.1 Glycine max flowering locus C-like protein 2 (FLCL2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631161.11e-118MADS-box protein FLOWERING LOCUS C isoform X5
RefseqXP_014631162.11e-118MADS-box protein FLOWERING LOCUS C isoform X5
RefseqXP_028232721.11e-118MADS-box protein FLOWERING LOCUS C-like isoform X4
RefseqXP_028232722.11e-118MADS-box protein FLOWERING LOCUS C-like isoform X4
TrEMBLK7KQB31e-117K7KQB3_SOYBN; Uncharacterized protein
STRINGGLYMA05G28130.18e-94(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.43e-35MIKC_MADS family protein