PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G148800.1.p
Common NameGLYMA_05G148800, LOC100805078
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27908.8 Da    PI: 8.8319
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G148800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Glyma.05G148800.1.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                         79***********************************************96 PP
2K-box95.31e-31931741697
                K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          s+qqe+ kLk+++e Lqr+qR+l+GedL++Ls keL++Le+qL++slk+iRs++++++l+q+++lq+ke+ l+e+n++Lr++
  Glyma.05G148800.1.p  93 SSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQR 174
                          689*****************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-33275IPR002100Transcription factor, MADS-box
CDDcd002655.62E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.81691182IPR002487Transcription factor, K-box
PfamPF014864.8E-2693174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMLKTLERY QKCNYGAPEA NVSTREALVM ELSSQQEYLK LKARYEALQR SQRNLMGEDL  120
GPLSSKELES LERQLDSSLK QIRSTRTQFM LDQLSDLQRK EHLLSEANRS LRQRQLEGYQ  180
INPLQLNPGV EEMGYGRHPA QTHGEALFQQ MECEPTLQIG YQPDPVSVVT AGPSMSNYMA  240
GWLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-49751781104Developmental protein SEPALLATA 3
4ox0_B3e-49751781104Developmental protein SEPALLATA 3
4ox0_C3e-49751781104Developmental protein SEPALLATA 3
4ox0_D3e-49751781104Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.227280.0flower| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During seed development, highest expression is found in the seed coat of young seeds. Expression decreases steadily during further seed development but is detectable until desiccation begins. {ECO:0000269|PubMed:9869431}.
UniprotTISSUE SPECIFICITY: Expressed abundantly in the seed coat and to lesser extent in young buds, carpels, petals, and stamen. {ECO:0000269|PubMed:9869431}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000269|PubMed:9869431}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G148800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0936170.0BT093617.1 Soybean clone JCVI-FLGm-17F9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579433.11e-180K-box region and MADS-box domain-containing protein isoform X1
RefseqXP_025984163.11e-180K-box region and MADS-box domain-containing protein isoform X1
RefseqXP_028232724.11e-180MADS-box transcription factor 1 isoform X1
RefseqXP_028232725.11e-180MADS-box transcription factor 1 isoform X1
SwissprotO658741e-152MTF1_PEA; MADS-box transcription factor 1
TrEMBLK7KQB41e-179K7KQB4_SOYBN; Uncharacterized protein
STRINGGLYMA05G28140.31e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.21e-132MIKC_MADS family protein
Publications ? help Back to Top
  1. Buchner P,Boutin JP
    A MADS box transcription factor of the AP1/AGL9 subfamily is also expressed in the seed coat of pea (Pisum sativum) during development.
    Plant Mol. Biol., 1998. 38(6): p. 1253-5
    [PMID:9869431]