PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G151800.1.p

Common Name

GLYMA_05G151800, LOC100816484

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HSF

Protein Properties

Length: 480aa MW: 54028.9 Da PI: 5.3763

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G151800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.3	1.4e-34	16	106	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl k+y++++d+++++++sws+++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k Glyma.05G151800.1.p 16 FLLKTYDMVDDASTNDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPER---------WEFANDEFLKDQK 96 9**************************************************************999.........********* PP XXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkk 101 +ll++i r+k Glyma.05G151800.1.p 97 HLLKNIYRRK 106 ******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.6E-37	7	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.2E-60	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.01E-35	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.6E-30	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-19	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-19	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-19	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MDGAPQSAGA GGPAPFLLKT YDMVDDASTN DIVSWSSTNN SFVVWNPPEF ARLLLPTYFK 60 HNNFSSFIRQ LNTYGFRKIH PERWEFANDE FLKDQKHLLK NIYRRKPIHS HSHPPGSLVD 120 PERAAFEEEI DKLSREKTSL ESNIYNFKQH QSTAKPKLED FLQRLDGIEQ RQKQLLNFFE 180 KALQNPTFVE HLSRKIESMD LSAYKKRRLP QVDHVQPVAE SSLVDSHSNF RMEFGNVFHQ 240 DFSNKLRLEL SPAVSDMNLV SRSTQSSNED GESPQKKLSE VEPKGVQTRT ALTFAPETLE 300 LADTGASFTF KMDSCLSRKT TTAESSKLIS LEPSSEEGDS LSCQLNLTLA SCPLQVNRNS 360 YSARSPQIDC QEIGKLAESR FFANGKESDS GVSSNLNVAA EATNLALSQE DPSNNQVNPA 420 PPDRVNDVFW EQFLTERPGC SDNEEAMSNY RANPHDEQDE GRSAHGISRN IKNMDQLTL*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MDGAPQSAGA GGPAPFLLKT YDMVDDASTN DIVSWSSTNN SFVVWNPPEF ARLLLPTYFK  60
HNNFSSFIRQ LNTYGFRKIH PERWEFANDE FLKDQKHLLK NIYRRKPIHS HSHPPGSLVD  120
PERAAFEEEI DKLSREKTSL ESNIYNFKQH QSTAKPKLED FLQRLDGIEQ RQKQLLNFFE  180
KALQNPTFVE HLSRKIESMD LSAYKKRRLP QVDHVQPVAE SSLVDSHSNF RMEFGNVFHQ  240
DFSNKLRLEL SPAVSDMNLV SRSTQSSNED GESPQKKLSE VEPKGVQTRT ALTFAPETLE  300
LADTGASFTF KMDSCLSRKT TTAESSKLIS LEPSSEEGDS LSCQLNLTLA SCPLQVNRNS  360
YSARSPQIDC QEIGKLAESR FFANGKESDS GVSSNLNVAA EATNLALSQE DPSNNQVNPA  420
PPDRVNDVFW EQFLTERPGC SDNEEAMSNY RANPHDEQDE GRSAHGISRN IKNMDQLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-22	5	105	15	129	Heat shock factor protein 1
5d5v_B	1e-22	5	105	15	129	Heat shock factor protein 1
5d5v_D	1e-22	5	105	15	129	Heat shock factor protein 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.62761	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G151800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097651	0.0	BT097651.1 Soybean clone JCVI-FLGm-26G4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340355.1	0.0	heat stress transcription factor 9
Swissprot	Q94BZ5	1e-165	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	I1K3S2	0.0	I1K3S2_SOYBN; Uncharacterized protein
STRING	GLYMA05G28460.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53
Representative plant	OGRP9716	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-168	HSF family protein

Link Out ? help Back to Top
Phytozome	Glyma.05G151800.1.p
Entrez Gene	100816484

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]