PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G166100.1.p

Common Name

GLYMA_05G166100, LOC100805791

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 218aa MW: 24270.9 Da PI: 9.1736

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G166100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.6	7.4e-32	122	178	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rak+e+e+k+ +++rkpylheSRhkhAl RpRg+gGrF Glyma.05G166100.1.p 122 EEPVFVNAKQYHGILRRRQYRAKAESENKI-IRNRKPYLHESRHKHALTRPRGCGGRF 178 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.8E-36	120	181	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.622	121	181	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.6E-27	123	178	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.2E-23	124	146	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	126	146	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.2E-23	155	178	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MVWTVLRASR NMTSAHDLTD NEDDGQQQSE SPMQPPSVNG ISDPGISTQN VNVQYAAPGQ 60 LGTGHAMVPH VYPYPDPYYR SIFAPYDTQP YPPQAYSGQP MVHLQLMGIQ QAGVPLPTDA 120 VEEPVFVNAK QYHGILRRRQ YRAKAESENK IIRNRKPYLH ESRHKHALTR PRGCGGRFLN 180 SKKDKNQNDD VASADKSQSN ININSNKNDQ TSSDRAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-21	121	182	1	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.57510	0.0	cotyledon\| leaf\| somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G166100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095253	0.0	BT095253.1 Soybean clone JCVI-FLGm-7E1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006580212.1	1e-162	nuclear transcription factor Y subunit A-4 isoform X1
Swissprot	Q84JP1	5e-68	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	I1K472	1e-161	I1K472_SOYBN; Uncharacterized protein
STRING	GLYMA05G29970.1	1e-161	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-54	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Glyma.05G166100.1.p
Entrez Gene	100805791

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]