PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G170100.1.p
Common NameGLYMA_05G170100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 152aa    MW: 17413.2 Da    PI: 10.0613
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G170100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.93.4e-14842135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +C+   TplWR+gp+ ++ LCnaCG +yrk g+
  Glyma.05G170100.1.p  8 CFHCKIHITPLWRNGPEDKPVLCNACGSRYRKCGS 42
                         ****************88888**********9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.3E-6270IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-11546No hitNo description
CDDcd002022.95E-10739No hitNo description
Gene3DG3DSA:3.30.50.101.8E-12841IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.264838IPR000679Zinc finger, GATA-type
PfamPF003205.3E-12841IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGRKHGPCFH CKIHITPLWR NGPEDKPVLC NACGSRYRKC GSLENYLPNH FQPEYPDNLK  60
MLKRRKTLKG GKGRYLCSPK IPTRKRSPLV RKKITPMKRF YMQLQNMWED YGNSNESSSE  120
EVLIFNNVNN FIPSNEIGLG CIPLKLDDAS A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15864LKMLKRR
25965KMLKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G170100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984380.11e-105GATA transcription factor 26-like
SwissprotQ5PP382e-18GAT27_ARATH; GATA transcription factor 27
TrEMBLK7KQQ31e-108K7KQQ3_SOYBN; Uncharacterized protein
STRINGGLYMA05G30390.21e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.11e-19GATA transcription factor 27