PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G184500.1.p
Common NameGLYMA_05G184500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 189aa    MW: 21454.6 Da    PI: 8.3026
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G184500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-28110168159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkk+ver+++d ++v++tYeg Hnhe
  Glyma.05G184500.1.p 110 MDDGYKWRKYGKKSVKSNPNLRNYYKCSSGGCSVKKRVERDRDDSSYVITTYEGVHNHE 168
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-3297170IPR003657WRKY domain
SuperFamilySSF1182901.31E-26102170IPR003657WRKY domain
PROSITE profilePS5081130.389105170IPR003657WRKY domain
SMARTSM007741.0E-31110169IPR003657WRKY domain
PfamPF031068.9E-23111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDFYFGNPHP YPNIHQYHAH NSVVSMTPSS PEIALSDYLM LDDYVDHQDS RSSQSTESSE  60
KATFCDPTHG FSTGATSKNN NMKCKNGINE NKRGVGPRIA FRTKSELEIM DDGYKWRKYG  120
KKSVKSNPNL RNYYKCSSGG CSVKKRVERD RDDSSYVITT YEGVHNHESP FTTYYSPISF  180
VHSDTTFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-24100170777Probable WRKY transcription factor 4
2lex_A4e-24100170777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.208800.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G184500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0911580.0BT091158.1 Soybean clone JCVI-FLGm-7E8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235313.21e-140uncharacterized protein LOC100500248
RefseqXP_028233204.11e-140probable WRKY transcription factor 50
TrEMBLA0A445KQ761e-138A0A445KQ76_GLYSO; Putative WRKY transcription factor 51
TrEMBLI1K4R61e-138I1K4R6_SOYBN; Uncharacterized protein
STRINGGLYMA05G31800.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-41WRKY DNA-binding protein 51