PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G185400.1.p
Common NameGLYMA_05G185400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 217aa    MW: 24732 Da    PI: 9.6677
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G185400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.2e-31147205159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYYrC + +C+vkk+ver aedp++v++tYeg+H h+
  Glyma.05G185400.1.p 147 LDDGYKWRKYGQKVVKGTHHPRSYYRCIQDNCRVKKRVERFAEDPRMVITTYEGRHVHS 205
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-32132205IPR003657WRKY domain
SuperFamilySSF1182901.31E-27139206IPR003657WRKY domain
PROSITE profilePS5081128.828142207IPR003657WRKY domain
SMARTSM007743.6E-34147206IPR003657WRKY domain
PfamPF031062.0E-24148204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSTTSHSIVH HSLFEEQDQM PTQIGFFPFP TNLTFPPLGC HQSSLKAFSS IAPSSSLVIS  60
QQDSVSNLTA ETLFSTTAQK SREDLTSSFR GAQFLSLHRL SVNPWALGEV ADCFSSKRTT  120
KMKKIKARRK VREPRFCFKT MSDMDELDDG YKWRKYGQKV VKGTHHPRSY YRCIQDNCRV  180
KKRVERFAED PRMVITTYEG RHVHSPSNDL EDSIST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-26138204874Probable WRKY transcription factor 4
2lex_A5e-26138204874Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268471e-151stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G185400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909141e-148BT090914.1 Soybean clone JCVI-FLGm-5N5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237342.21e-138WRKY transcription factor 40
RefseqXP_028246516.11e-138probable WRKY transcription factor 13 isoform X1
TrEMBLI1K4S91e-161I1K4S9_SOYBN; Uncharacterized protein
STRINGGLYMA05G31910.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.19e-55WRKY DNA-binding protein 13