PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G189700.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 144aa    MW: 16338.6 Da    PI: 8.3917
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G189700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.86.6e-3741041101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk + rkC++dC++ pyfpa++p++fa+vh+++G snv k+l+++p+  re+a+++l++eA+ r++dPvyG++g+i+kl +q++++
  Glyma.05G189700.1.p   4 RCAACKNQTRKCSSDCIFFPYFPANDPQRFACVHRIYGGSNVGKMLQQIPPYLREQAANTLYFEAQRRIQDPVYGCTGIISKLYEQINNT 93 
                          6***************************************************************************************** PP

               DUF260  91 kaelallkeel 101
                          +  la++++++
  Glyma.05G189700.1.p  94 EIALAHIQTQI 104
                          *9999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.3863104IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-374101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSSRCAACKN QTRKCSSDCI FFPYFPANDP QRFACVHRIY GGSNVGKMLQ QIPPYLREQA  60
ANTLYFEAQR RIQDPVYGCT GIISKLYEQI NNTEIALAHI QTQIACLKLQ VPQEKAESNF  120
NVLRAQSSGT TEFQWQSQVC WFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3221049111LOB family transfactor Ramosa2.1
5ly0_B6e-3221049111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G189700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595718.12e-85LOB domain-containing protein 24
RefseqXP_028201029.12e-85LOB domain-containing protein 24-like
SwissprotP594678e-40LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594688e-40LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0R0K3Z91e-103A0A0R0K3Z9_SOYBN; Uncharacterized protein
STRINGGLYMA05G32320.21e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-42LOB domain-containing protein 24