PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G190500.1.p
Common NameGLYMA_05G190500, LOC102670057
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 455aa    MW: 51705.4 Da    PI: 9.5128
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G190500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.3e-07138159426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + Cr+f + G C++G+rC+F H 
  Glyma.05G190500.1.p 138 PYCRDFVA-GKCRRGNRCRFLHH 159
                          67******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.605134161IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-4135160IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4138159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5140160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878189216IPR000571Zinc finger, CCCH-type
SMARTSM003560.013190215IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSESGRNTSS SEWNLRDEPE FASYGVASSN SSKWSNLKRN DELKPTMGFS CEEPVSGRKG  60
SNKDDIANTN YGVWDATNAQ DTDGSYNMQI SPGLDEDYKN KCNQSLKDGC SKLFRSRSRS  120
PPRSFRWDSG RVGGLTQPYC RDFVAGKCRR GNRCRFLHHD DQNYGNSWEN RHIYSAPNEN  180
NNYSRTIGRS YNRTCFHYAQ GRCKMGASCK YVHHDNFDRR RTESCLEQGV QHGSNQNRLH  240
GESTFSSDIK KSNWAAKNDS ANVHTSQTVG ADIWLDNEKM SPPNWIYDVR SSIHINQEQG  300
QSKQQVAPGQ VLHQNVSKTF IKPEPVVRFP KQRDPTCNSR EQKNVNATGG VSLAYFPNRQ  360
LVKNEHPVQL KGIHTFKFSL VEFVKELLNP TWKDGKITKE DYKAIVKKVT DKVIDTVQGA  420
HIPQTQEKID CYLSSSKSKL NKLVQAYVEK FQKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G190500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631271.10.0uncharacterized protein LOC102670057
TrEMBLK7KR550.0K7KR55_SOYBN; Uncharacterized protein
STRINGGLYMA05G32395.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3538322
Representative plantOGRP1203666