PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G190600.1.p
Common NameGLYMA_05G190600, LOC100775296
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 267aa    MW: 29433.1 Da    PI: 5.7344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G190600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08139179954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Glyma.05G190600.1.p 139 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 179
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-12136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.90E-11136184No hitNo description
SMARTSM003531.3E-12136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6140179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
METNTSAFTN VNSTWNLEKM ETNEQQNDEH NIILQVQDPM GSGIWPSNNY HNLLQMHQTP  60
NTTTLSIIAP PPSSSGFLGD ILGVHNLEED EEPEEELGAM KEMMYKIAAM QPVDIDPATI  120
RKPKRRNVRI SDDPQSVAAR HRRERISEKI RILQRLVPGG TKMDTASMLD EAIRYVKFLK  180
RQIRLLQSIP QSSNPPQCIG VATTSHHAST LLLAPSCDWP FAPNVLPSST AATASMDMSA  240
GLGFDVGHAH ACDGSSSFNH HEVISE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G190600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524301.10.0transcription factor HEC3-like
RefseqXP_028233281.10.0transcription factor HEC3-like
TrEMBLA0A445KQH80.0A0A445KQH8_GLYSO; Transcription factor IND
TrEMBLK7KR560.0K7KR56_SOYBN; Uncharacterized protein
STRINGGLYMA05G32410.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-48bHLH family protein